ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_137586_16

Organism: 2019_SCN_bioreactor_200211_biofilm_Sphingobacteriia_51_13

near complete RP 44 / 55 MC: 1 BSCG 49 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(21989..23104)

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GH72_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 56.1
  • Coverage: 376.0
  • Bit_score: 426
  • Evalue 2.00e-116
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:CCH53247.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.1
  • Coverage: 376.0
  • Bit_score: 426
  • Evalue 2.90e-116
acriflavin resistance protein similarity KEGG
DB: KEGG
  • Identity: 57.0
  • Coverage: 374.0
  • Bit_score: 420
  • Evalue 3.20e-115

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Fibrisoma limi → Fibrisoma → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1116
ATGATCATTGTATCCGGATTGATGGCGGCTTGCGGCGACAACAAGCCTGCCGGTCCCGCGACGCCTCCACCCGTTGCCGTATCGGTCTATTCCGTTGCGCCGGGAGATGCTACTTATTACGACTCTTACCCCGCAACGGTGGCGGCATTGAACCAGGTCGATATAAAGCCGCAGGTAGCAGGAAATATCACGCATATCTTTTTCCAGGACGGCCAGCAGGTGCGCAAAGGACAGCCGCTGTATGAGATCGACCAGCAACAGTACAAAGCTGCCTATGAATCGGCCGTAGCCAGCCTCAACGTACAAAAAGCCAATCTGGCCAAAGCCCAGCAGGATGCCGACCGCTACACCGAGCTGTCTCAGAAGGACGCTATCGCCAAACAGACGCTGGATCATGCCCTCGCCGACCTGGAAGCCACCAAACGCCAGGTAGAAGCAGCCCAGGCCAACGTGGCCAGCGTGCAGACCAACTTGAAATACTCCATGATCTACGCACCCTTCGATGGCACCATCGGTATCTCCCAGGTAAAGCTGGGAACGGCTGTCTATCCTCAGACATTGCTGAATACGGTCTCCCAGAATAACCCCCTGGCAGTCGATGTAGCCCTCGATGAGAAGCAGATCGCCCGTTTCACCGGTCTCCTGAACCAGAAGACGGCGCCCACCGATTCTACTTTCATCTTTATGATGCCGGATGGCTCGGCCTATCCCTTCCCCGGTCACCTGCTGCTCCTGGACCGTGCGGTAGATCCCACGACAGGCACGATCAAAGCTCGTTTGACCTTCCCCAATCCAAAAGATATCATACGTCCCGGCGTCACCGGTAACGTGAAGGTGCAGAACAAAGGTGCCGCAGGCAGCCTGCTCATACCTTACAAATCCGTTGTCGAACAGATGGGCGAATATTTCGTGTATGTGTTAGGAGATAGCAGCAAGGTTTTCCAGAAGAAGGTGGTATTGGGCGCACACGTTGCTGACAAGGTGGTCGCAAGAGACGGTGTAAAGGAAGGTGATAAGGTGGTGACGGAAGGCGTGCAGAAGCTGCGGGACGGCGTGAAGGTGAACGTGGGCGCACCCGGAGCAAAACCCCAGACAGGAGCGCCCCAGGGCAAATAA
PROTEIN sequence
Length: 372
MIIVSGLMAACGDNKPAGPATPPPVAVSVYSVAPGDATYYDSYPATVAALNQVDIKPQVAGNITHIFFQDGQQVRKGQPLYEIDQQQYKAAYESAVASLNVQKANLAKAQQDADRYTELSQKDAIAKQTLDHALADLEATKRQVEAAQANVASVQTNLKYSMIYAPFDGTIGISQVKLGTAVYPQTLLNTVSQNNPLAVDVALDEKQIARFTGLLNQKTAPTDSTFIFMMPDGSAYPFPGHLLLLDRAVDPTTGTIKARLTFPNPKDIIRPGVTGNVKVQNKGAAGSLLIPYKSVVEQMGEYFVYVLGDSSKVFQKKVVLGAHVADKVVARDGVKEGDKVVTEGVQKLRDGVKVNVGAPGAKPQTGAPQGK*