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berkeley_reactor_200306_biofilm_scaffold_12255_50

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(47771..49252)

Top 3 Functional Annotations

Value Algorithm Source
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Rhizobium sp. AP16 RepID=J2WDA8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 71.3
  • Coverage: 481.0
  • Bit_score: 691
  • Evalue 5.90e-196
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EJK80605.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 71.3
  • Coverage: 481.0
  • Bit_score: 691
  • Evalue 8.30e-196
putative major facilitator superfamily (MFS) drug efflux transporter similarity KEGG
DB: KEGG
  • Identity: 71.2
  • Coverage: 476.0
  • Bit_score: 684
  • Evalue 1.20e-194

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Taxonomy

Rhizobium sp. AP16 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1482
ATGCCCGACGACACCATGCGAACGGATCCGGCCGACCTGCCGGCACCGGACGGCAGGGGCGGCACCTTCGCCGTCGAGCGCGACCCGCGCCTGCGCCTGCTCATCCCGCTGGTGGTCGCCGTCGCCTTCCTGATGGAGCAGCTCGATTCCACCATCATCACCACGGCCATCCCCGACATGGCGCTGAGCCTCGGCACCACGCCGCTGCGCCTGAACCTGGCCGTGACCACCTATGTCCTGACGCTCGCGATGTTCATTCCGGTCAGCGGCTGGTTCGCCGACCGCTTCGGCGCCCGCCGGATCTTCGCCCTGGCGCTGGCGATCTTCACCCTGGGCTCGATCCTGTGCGGCCTCGCCACCGGCCTGCCCACGCTGCTGGCCGCGCGCGCTCTCCAGGGCTTCGGCGGCGCCATGATGACGCCGGTCGGCCGCCTGATCCTGCTGCGCAGCTTTCCCCGACGCGACCTGGTCATGGCCATGACCTATACCACCATGCCGGCGATCCTCGGCCCGGTGATCGGCCCGCTGCTCGGCGGCGTCATCACCGAATATGCCTCCTGGCGCTGGATCTTCTTCGTCAACATCCCCTTCGGCCTGTTCGGCATCGTCATGGCGCTGCGCTATGTCGGCGACTTCAGCGGCGAGAAGGCGACGAAGTTCGACTTTCCCGGCTTCCTGATGGTCGGTGCCGGCGTCGTGCTGCTGCAGCTCGGGCTGGAGAATATCGGCCGGCCGATGCTGCCCGCCGCCGGCACCGCCGTGATGGTGGGGCTCGCCGTGCTGCTGCTCCTGGCCTTCGGCTGGTACGCCCGCCGCGTCGCCGCGCCGGCCGTCGACCTCGGCCTGTTCCGCCTGCGCTCCTTCGCCGTAGGCACGCTGGCCGGCGGCATCTGCCGCGTCGGCATGAACGGCGTGCCTTTCGTGCTGCCCCTGATGCTGCAGGTCGGCTTCGGCCTCTCCCCCACCGCCTCCGGCTCGCTCACCTTCGCCGCCAGCCTCGGCGCCCTCCTGGTGCGCCCGGTCGCGGGCAACCTCCTGCGCTGGTTCGGCTTCGACCGGGTGCTGACCTGGAGCGCCGTGTTCGGCGCGGCCATCATCGCCGGCTTCGCCCTGATCGGGCCGGAGACGCCGCATCTCCTCGTGCTGGCCTACGTCTTCGTCTTCGGCCTTGCCCGGGCGGCGCAGTTCATGACCTCGAACACGCTGTCCTATGCCGACATGCCCGACGAGCGCCTGAGCCGCGCCACCAGCCTCGGTGGCGTGCTGCAGCAGCTCAGCGTCAGCTTCGGCGTCTCGATCGGGGCGACGCTGCTCGGCGTGGTCACCTGGGACGATGCCGCGCTGACGCCGGCGCGCTTCCACGAGGTGTTCCTGATGATGGCGGTGATCCCGCTCCTCGGCATTCCCGGCTTCCTCCGCCTGCGCCCGGAGGACGGGGCGGAGGTGAGCCGGCACAGGAGGGGCGGGAAGAGCAGCCGCTAG
PROTEIN sequence
Length: 494
MPDDTMRTDPADLPAPDGRGGTFAVERDPRLRLLIPLVVAVAFLMEQLDSTIITTAIPDMALSLGTTPLRLNLAVTTYVLTLAMFIPVSGWFADRFGARRIFALALAIFTLGSILCGLATGLPTLLAARALQGFGGAMMTPVGRLILLRSFPRRDLVMAMTYTTMPAILGPVIGPLLGGVITEYASWRWIFFVNIPFGLFGIVMALRYVGDFSGEKATKFDFPGFLMVGAGVVLLQLGLENIGRPMLPAAGTAVMVGLAVLLLLAFGWYARRVAAPAVDLGLFRLRSFAVGTLAGGICRVGMNGVPFVLPLMLQVGFGLSPTASGSLTFAASLGALLVRPVAGNLLRWFGFDRVLTWSAVFGAAIIAGFALIGPETPHLLVLAYVFVFGLARAAQFMTSNTLSYADMPDERLSRATSLGGVLQQLSVSFGVSIGATLLGVVTWDDAALTPARFHEVFLMMAVIPLLGIPGFLRLRPEDGAEVSRHRRGGKSSR*