ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_12255_106

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 108708..110084

Top 3 Functional Annotations

Value Algorithm Source
Major facilitator superfamily MFS_1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EG05_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 73.9
  • Coverage: 395.0
  • Bit_score: 590
  • Evalue 7.70e-166
Arabinose efflux permease {ECO:0000313|EMBL:EYR80210.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.9
  • Coverage: 395.0
  • Bit_score: 590
  • Evalue 1.10e-165
major facilitator superfamily MFS_1 similarity KEGG
DB: KEGG
  • Identity: 73.5
  • Coverage: 396.0
  • Bit_score: 587
  • Evalue 2.40e-165

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1377
ATGGCCGGTGAACCGAAACCGTGTTTTTTCCTGAACTCTCGGCCCTTGCCCTCGCCGCGATCGCCTGACAGGGTGAGCGAAACAAAGGCGCGCCCGCGCCGTACAATCGGCCCTCCGGGCCGCTGGGAAGATCCGCCCGTGACCGCAGCCAAGCACGATGTCGATTCGCCCTATGCCTGGCTGCGCCTCGGCCTGTCGCTGATCGTCGGCGCCACGGCCTGCGTCGGCAACTGGTCGGTCGTGGTGGTGCTGCCGGCGATCCAGACCGAATTCGAGACCATCCGGGGCGGCGCCTCCCTGCCCTTCACCTTCACCATGCTGGGCTTTGCCGCCGGCGGCGTCGTCATGGGACGCATCGCCGACCGGGCCGGCCTGGTCGCCTGCATCGAGGCCGGAGCGCTGCTGCTGCTCGCCGGCTATCTCGCCTGCAGCTTCTCCACCTCGCTCTGGCAGTTCACCCTGGCGCACGGGCTCCTGATCGGCGTCGGCTCGGCGGCGGGCTTCGCGCCGCTGATCTCCGACCTCTCGCACTGGTTCCGCCGCCGCCGGGCGCTGGCGGTGGCGGTGGCCGCCTCGGGCAGCTACCTCGCCGGCACGATCTGGCCGCCGATCACCCAGCACTTCGTCGAGACGCAGGGCTGGCGCGCCACCTATCTCGGCATCGGTATCGTCGCCTTCCTGATCATGGTGCCGCTCGGCCTGACGATGCGCCGGCGGCCGACGGCCGGCGCGCTCGCCGAGGCCGAGGCGGCCACGGCGGTGGAGCGCAGCCGGCTCGGCCTGTCGCCGAACGTGCTGCAGGGCGTCCTGGTGGTGGCGGGCTTCGCCTGCTGCATGGCGATGTCGATGCCGCAGGTGCATCTCGTCGCCTATTGCGGCGACCTCGGCTACGGCGTCGCCATCGGCGCCGAGATCCTGTCGCTGATGCTCGGGCTCGGCGTGGTCAGCCGCCTCGCCTCCGGCTTCGTCGCCGACCGAATCGGGGCCGGGCCGATGCTGATCCTCGGCTCGGCCATGCAGGCGGCGGCGCTGCTGCTCTACCTCTTCTTCGACAGCCTCTCGTCGCTCTTCGTCATCTCAGGCCTGTTCGGCCTGTTCCAGGGCGGCATCGTGCCGATGTACGCGGTGATCATCCGCCAGTTCCTGCCGCCGCGCGAGGCCGGCACCCGCATCGGCCTGGTGCTGATGGCCACCGTGCTCGGCATGGCCTGCGGCGGCCTCGCCTCCGGTTTCATCTACGACCTCTCGGGCTCCTATCGCCTCGCCTTCCTGCACGGCTTCCTGTGGAACTGCGTCAACCTCGCTCTGGTGTGCTGGCTGATCCTGCGGCCGCGCATGAAGCGGCCGGCCGGCGGCCCGGCGCCCGCCGCGGCCTGA
PROTEIN sequence
Length: 459
MAGEPKPCFFLNSRPLPSPRSPDRVSETKARPRRTIGPPGRWEDPPVTAAKHDVDSPYAWLRLGLSLIVGATACVGNWSVVVVLPAIQTEFETIRGGASLPFTFTMLGFAAGGVVMGRIADRAGLVACIEAGALLLLAGYLACSFSTSLWQFTLAHGLLIGVGSAAGFAPLISDLSHWFRRRRALAVAVAASGSYLAGTIWPPITQHFVETQGWRATYLGIGIVAFLIMVPLGLTMRRRPTAGALAEAEAATAVERSRLGLSPNVLQGVLVVAGFACCMAMSMPQVHLVAYCGDLGYGVAIGAEILSLMLGLGVVSRLASGFVADRIGAGPMLILGSAMQAAALLLYLFFDSLSSLFVISGLFGLFQGGIVPMYAVIIRQFLPPREAGTRIGLVLMATVLGMACGGLASGFIYDLSGSYRLAFLHGFLWNCVNLALVCWLILRPRMKRPAGGPAPAAA*