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berkeley_reactor_200306_biofilm_scaffold_12255_113

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(117134..118363)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CE1B59 related cluster n=1 Tax=unknown RepID=UPI0003CE1B59 similarity UNIREF
DB: UNIREF100
  • Identity: 62.8
  • Coverage: 368.0
  • Bit_score: 430
  • Evalue 1.60e-117
Uncharacterized protein {ECO:0000313|EMBL:ESY62458.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.8
  • Coverage: 368.0
  • Bit_score: 430
  • Evalue 2.20e-117
putative RND efflux transporter, MFP subunit similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 345.0
  • Bit_score: 377
  • Evalue 3.40e-102

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Taxonomy

Mesorhizobium sp. LNHC252B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1230
ATGGCCGACAACAAAAAGCGATCGGGACTTGCTGCTGTCGCGGTGCTGGCATTGCTGGTCGTGGGCGGATGGGGCGCAACGCACTGGACGGCCGTCACCGGAACCAGCCCATGGGCGGCCTCGCGCGCCACATCCGAAACCGCCGCTTCACCTGCGATCCCCGTGACCGTCGTCTCGGCGAAGACAGGAAGCGTCCCGCGCATCATCGCCGGCATCGGCGTCGTCGCGGCCCTGCAATCCGTCACCGTTCGCAGCCGTGTCGATGGCGAAGTCATGGACATTGCCTTTTCCGAAGGCCAATTCGTGAAAGCGGGCGACGTGCTGGTCCAGATCGACCCGCGGCAGCTTCAGGCCGCCCTCGCCGGGGCCGAGGCCAGAAAGGCGCAGGACATATCGCAGCTCGCGACGGCCCGCAGCGACCGCGAGCGCTACGCCACGCTGGCCCAGAAGGACATTGTCTCGTCCCAGACGCTTGACCTCAAGAATGCCGCGGTGAAGCAGCTCGAGGCCGCCGTCGCCTCGGATGATGCCTCGATCAGCAGCGCCCGCACCCAGCTCAGCTACGCGACCATCCGCGCCCCGATCAGCGGCCGAACCGGTTTTCGCAACGTCGACAAGGGGGGCATGGTCGGACAGTCCTCGATCAACGGCATCGTCACCATCACCCAGCTCGATCCGGTCGGCGTGGTCTTCGTGGCGCCTGGCGACCGCTTCGGAGAGATTCGTGCCGCGCTCAACGCCGGCCTTGCCGACGTCGTGGCGCTTTCGACGGACGGCACGAAAGTGCTCGCGCGCGGCAAGCTCACGTTGATGGACAACACCGTCGATGCCCAGAACGGCTCGATCAAATTGCGGGCGACATTCGACAACAAGGACGACGTGCTTTGGCCCGGCCTGCCCGTCGCAACACGTCTGACGGTGGCGGTGGAACGTGGCGTGGTGGTGCCGGACAAGGCTCTTGCGCGGGGCGTGGACGGCCTGGCGGCCTATGCCGTCGGATCCGATGGCACCGCTCATCGCCGATCGGTCACGACGGCGGTGGTGACCGACGGGTTCGCGGTGGTCACGAGGGGCGTGAGCGCCGATGAGCAGATCGTCTATGACGGCCTCGGCCAAATCGCGGACGGAGCAAAGGTGGCGGTCGGGCCACCTCCCGTCATCGCTCCGCCGGCGTTTCAGGTTCAACCGCAAGCGGACGCGGCTCTCGCCAGCGCGGTGTCCGTGCCATGA
PROTEIN sequence
Length: 410
MADNKKRSGLAAVAVLALLVVGGWGATHWTAVTGTSPWAASRATSETAASPAIPVTVVSAKTGSVPRIIAGIGVVAALQSVTVRSRVDGEVMDIAFSEGQFVKAGDVLVQIDPRQLQAALAGAEARKAQDISQLATARSDRERYATLAQKDIVSSQTLDLKNAAVKQLEAAVASDDASISSARTQLSYATIRAPISGRTGFRNVDKGGMVGQSSINGIVTITQLDPVGVVFVAPGDRFGEIRAALNAGLADVVALSTDGTKVLARGKLTLMDNTVDAQNGSIKLRATFDNKDDVLWPGLPVATRLTVAVERGVVVPDKALARGVDGLAAYAVGSDGTAHRRSVTTAVVTDGFAVVTRGVSADEQIVYDGLGQIADGAKVAVGPPPVIAPPAFQVQPQADAALASAVSVP*