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berkeley_reactor_200306_biofilm_scaffold_24940_39

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(38192..39436)

Top 3 Functional Annotations

Value Algorithm Source
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2DEQ2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 71.9
  • Coverage: 406.0
  • Bit_score: 615
  • Evalue 2.00e-173
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEA08945.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.2
  • Coverage: 406.0
  • Bit_score: 618
  • Evalue 5.70e-174
ABC transporter substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 71.9
  • Coverage: 416.0
  • Bit_score: 615
  • Evalue 9.80e-174

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1245
GTGACTGCGATCCTGAAGACTGCGCTCATCGGCGCCATGGCCGGCTCGCTCGTGGCCGGCGCCTCGGCGGCCTCGGCCCAGAAGCTGACGGTGTGGACGCTGAACTTCAGCTCCGCCGCATCGAACGATGCGCTGGCCAAGATCGCCGGGGATTTCGAGGCGGCCAATCCCGGCACGAAGGTCGAGATCGTCACCCGCGGCGTCGACGACCACAAGACCGCGCTGCGCGTCGCCGCCGGCTCCGACCGCGGCCCCGACATCTATTTCAGCTGGGCCGGCCTCGGCCTCGGCGGCGAATATGTCAAGGCCGGGCTCAGCCTGCCGCTCGACAAGTACTACCAGCAGTACAAGTGGGACGACGAGCTGGTGCCGGCGGCCGCCTCCTTCTCGAAGCTCTATCCCGGTGGCCGGCACGGCGTGCCCTTCACCTTCAAGGGCGAGGCGCTCTACTACAACAAGAGCCTGTTCGAGAAGGCCGGGATCACCGCGACGCCGGCGAGCTACGACGAGCTCGTCGCCGACGCCGAGAAGCTGAAGGCGGCCGGCATTCCCGCCATCACCTTCGGCGGCACGGTGAACTGGCACGTCATGCGCCTGATGGACGTGATCCTCGAGGCCAAATGCGGCGTCGAGAAGCACGACGCGCTGATGAGCATGACGGCGAGCTGGAAGGAAGAGCCCTGCGCGACGCAGTCCTTCGCCGAGCTCGACAGATGGGCGAAGAATTACATCCTTTCGCCGTTCATGGGCATCGACAACAACCAGTCCTTCAACCTGTTCGTCGCCGGCCGCGCCGCCATGATGCTCGAGGGCGACTGGCTGGTGCAGCAGCTCGCCGAGGCCGGCAACCTCGACGGCTATGGCCTCTTCCCCTTCCCGACCGGAACCAAGCGGCTCTACGGCTTCGCCGAGTACCACTATATCAGCACCAAGAGCAAAGAGCCGGACCTCGCCGCCAAGTTCCTCGACACCTTCATCTCGACGAGCGTGCAGCAGGCGGTGCTCGGCAAGTTCAGCACCAGTTCGATCAACCGGAACGTCAAATACGAGAACCTGCGGCCGCTCGACGCGCAGTGGAACGAGATCTTCAAGACCTACGCGCAAGTCTACATGAACGGTGACCAGGCCTTCCCGCTCGACGTCACCACCGAATATTTCCGGGTGATCAACGAGGTGGCGACCGGCAACCTCGCCCCGGCCGATGCCGCGGCCCAGCTCCAGACCTTCATCGGCAACCGCAAGTGA
PROTEIN sequence
Length: 415
VTAILKTALIGAMAGSLVAGASAASAQKLTVWTLNFSSAASNDALAKIAGDFEAANPGTKVEIVTRGVDDHKTALRVAAGSDRGPDIYFSWAGLGLGGEYVKAGLSLPLDKYYQQYKWDDELVPAAASFSKLYPGGRHGVPFTFKGEALYYNKSLFEKAGITATPASYDELVADAEKLKAAGIPAITFGGTVNWHVMRLMDVILEAKCGVEKHDALMSMTASWKEEPCATQSFAELDRWAKNYILSPFMGIDNNQSFNLFVAGRAAMMLEGDWLVQQLAEAGNLDGYGLFPFPTGTKRLYGFAEYHYISTKSKEPDLAAKFLDTFISTSVQQAVLGKFSTSSINRNVKYENLRPLDAQWNEIFKTYAQVYMNGDQAFPLDVTTEYFRVINEVATGNLAPADAAAQLQTFIGNRK*