ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_45995_3

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 1969..2568

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J240_RHOP2 similarity UNIREF
DB: UNIREF100
  • Identity: 43.2
  • Coverage: 176.0
  • Bit_score: 125
  • Evalue 3.10e-26
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 43.2
  • Coverage: 176.0
  • Bit_score: 125
  • Evalue 8.60e-27
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.2
  • Coverage: 176.0
  • Bit_score: 125
  • Evalue 4.30e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 600
ATGCATGCGGTCCGGGCCGGGCGCTCCTTCAGCAGGCCTCGCGCCCTCGGCGAGGCGGCCGAGAGGCTGTGGCGATCCCTGGCCGGCGAGGCGGAGCCGGCGCGCACGGCGGCGCAGGACGTCGATCCGCTGCTGCTCGACATGATTGCCGGCGGAGACATGGCGGCCTTCCGCACGCTGACGGAGCGCCATGCCGACCGGGGCTACGGCCTCGCCTTGCGTATCCTGCGCAGCCAGCCGGCGGCCGAGGCCGTGGTCCAGGACGCGATGCTGGCTGTGTGGACCAGCCGCGCCAAGGCGGTGGGCGACCGCGGCGCCTTCGCGGCCTGGCTGCGCGGCGCCGTCGTCGCGGGCTGCCTGGAGGCGCTCAGGGCCGGGCACGACGGAGCAGGGGAGACGGCGGACGATGCCGCCGCGACGCCGCCCGAGCGCGCCCTGGCCGCGCTGCCCGGCGATCAGCGCATCGCCATGGTTCTCGCCTATCACGAGGGCCTGGACAATGCCGGCATCGCCGGCGCGATGCGGCTGCCGCAGGAAGCGGTGGAGGCCTTGCTCAAGGCCGGCCGCATGGCGGCGCGCGAGGCCCTGCACGGCGGGTGA
PROTEIN sequence
Length: 200
MHAVRAGRSFSRPRALGEAAERLWRSLAGEAEPARTAAQDVDPLLLDMIAGGDMAAFRTLTERHADRGYGLALRILRSQPAAEAVVQDAMLAVWTSRAKAVGDRGAFAAWLRGAVVAGCLEALRAGHDGAGETADDAAATPPERALAALPGDQRIAMVLAYHEGLDNAGIAGAMRLPQEAVEALLKAGRMAAREALHGG*