ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_44015_18

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 7628..8161

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L6 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWC2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 74.6
  • Coverage: 177.0
  • Bit_score: 276
  • Evalue 1.20e-71
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.1
  • Coverage: 177.0
  • Bit_score: 277
  • Evalue 7.80e-72
rplF; 50S ribosomal protein L6 similarity KEGG
DB: KEGG
  • Identity: 73.4
  • Coverage: 177.0
  • Bit_score: 271
  • Evalue 1.50e-70

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methylobacterium aquaticum → Methylobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 534
ATGTCTCGTATCGGCAAGAAACCGGTCGCCGTGCCGGCGGGCGTCACCGCCTCGCTCGACGGCCAGACCGTCAAGGCCAAGGGCCCGAAGGGCGAGCTCGCCTTCCTCGTGCCGGACCTCGTGTCCGTCTCGCTGGACGCGGGCCTCGTCAAGGTGCAGCCGCGCGACGAGTCCAAGCCCGCGCGTGCCCAGTGGGGCATGTCGCGCACCATGGTCTCGAATATTTTCGTGGGCGTGACCAAGGGCTTCGAGAAGAAGCTCGAGATCAACGGCGTCGGCTACAAGGCCGCCGTCGCCGGCAAGGTGCTGAAGCTGTCGCTCGGCTATTCCCACGACGTCGATTTCCCGATCCCCGAGGGGATCGCGATCGTCGCGTCCAAGCCGACCGAGCTGCTGATCACCGGCATCGACAAGCAGAAGGTCGGCCAGGTCGCGGCGGAGATCCGCGAATATCGCGGCCCCGAGCCCTACAAGGGCAAGGGCGTCAAGTACGCCGGCGAGTTCATCTTCCGCAAGGAAGGCAAGAAGAAGTAA
PROTEIN sequence
Length: 178
MSRIGKKPVAVPAGVTASLDGQTVKAKGPKGELAFLVPDLVSVSLDAGLVKVQPRDESKPARAQWGMSRTMVSNIFVGVTKGFEKKLEINGVGYKAAVAGKVLKLSLGYSHDVDFPIPEGIAIVASKPTELLITGIDKQKVGQVAAEIREYRGPEPYKGKGVKYAGEFIFRKEGKKK*