ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_256481

Search features with annotation key words

Displaying items 31-60 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_256481_31
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35861..37189
DNA (1329bp) protein (443aa)
PepSY-associated TM helix family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JIH5_9BACT
PepSY-associated TM helix family {ECO:0000313|EMBL:EDY83021.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
peptidase
berkeley_reactor_200306_planktonic_scaffold_256481_32
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

37346..38278
DNA (933bp) protein (311aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFH5_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA27396.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_33
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

38268..38765
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDT7_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA27397.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_34
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

39068..40048
DNA (981bp) protein (327aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DEU6_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA27792.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_35
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

40125..40592
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTA7_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EAQ80160.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_256481_36
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

40812..43037
DNA (2226bp) protein (742aa)
G8 domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGI4_SINAD
G8 domain-containing protein
G8 domain-containing protein {ECO:0000313|EMBL:AGA27791.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_37
Pseudomonas chloritidismutans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43099..43581)
DNA (483bp) protein (161aa)
Sortase-like acyltransferase n=2 Tax=Pseudomonas stutzeri subgroup RepID=L0GRA6_PSEST
sortase
Uncharacterized protein {ECO:0000313|EMBL:ESQ98897.1}; TaxID=1263865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chloritidismutans AW-1.;"
berkeley_reactor_200306_planktonic_scaffold_256481_38
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43902..44219
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0ND09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB88020.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
beta-lactamase
berkeley_reactor_200306_planktonic_scaffold_256481_39
unknown

Not on your lists

comp(44418..44960)
DNA (543bp) protein (181aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_256481_40
unknown

Not on your lists

comp(45473..46873)
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029A0036
berkeley_reactor_200306_planktonic_scaffold_256481_41
Vibrio sp. DAT722, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47045..47584)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Vibrio sp. DAT722 RepID=Q2F9S4_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:ABA55947.1}; TaxID=344879 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. DAT722.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_256481_42
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(48082..49284)
DNA (1203bp) protein (401aa)
Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJI5_SINAD
serine phosphatase RsbU, regulator of sigma subunit
Serine phosphatase RsbU, regulator of sigma subunit {ECO:0000313|EMBL:AGA28988.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_43
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(49297..50325)
DNA (1029bp) protein (343aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHY1_SINAD
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
berkeley_reactor_200306_planktonic_scaffold_256481_44
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(50322..52754)
DNA (2433bp) protein (811aa)
Chemotaxis protein histidine kinase-like protein n=2 Tax=Singulisphaera acidiphila RepID=L0DJG8_SINAD
chemotaxis protein histidine kinase-like protein
Chemotaxis protein histidine kinase-like protein {ECO:0000313|EMBL:AGA28990.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_45
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(52751..53446)
DNA (696bp) protein (232aa)
Chemotaxis signal transduction protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK22_SINAD
chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:AGA28991.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_46
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(53443..54726)
DNA (1284bp) protein (428aa)
Methylase of chemotaxis methyl-accepting protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIA8_SINAD
methylase of chemotaxis methyl-accepting protein
Methylase of chemotaxis methyl-accepting protein {ECO:0000313|EMBL:AGA28992.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_47
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(54726..55187)
DNA (462bp) protein (154aa)
Chemotaxis signal transduction protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJI8_SINAD
chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:AGA28993.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_48
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(55406..57469)
DNA (2064bp) protein (688aa)
Methyl-accepting chemotaxis protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHY3_SINAD
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AGA28994.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_49
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(57539..58819)
DNA (1281bp) protein (427aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJH3_SINAD
branched-chain amino acid ABC transporter periplasmic protein
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:AGA28995.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_50
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

59519..61498
DNA (1980bp) protein (660aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPS6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30848.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_51
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

62503..63060
DNA (558bp) protein (186aa)
RNA polymerase sigma factor n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPK3_SINAD
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_52
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

63057..64766
DNA (1710bp) protein (570aa)
FecR protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF20_SINAD
FecR protein
FecR protein {ECO:0000313|EMBL:AGA27445.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_53
unknown

Not on your lists

64947..65153
DNA (207bp) protein (69aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_256481_54
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

65375..66424
DNA (1050bp) protein (350aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF21_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA27974.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_55
unknown

Not on your lists

66576..66776
DNA (201bp) protein (67aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_256481_56
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

67091..68158
DNA (1068bp) protein (356aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF21_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA27974.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_57
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

68372..71200
DNA (2829bp) protein (943aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DB70_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26110.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_58
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

71327..72754
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAJ9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25701.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_256481_59
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(72883..74238)
DNA (1356bp) protein (452aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QEI4_CATAD
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ACU70875.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
berkeley_reactor_200306_planktonic_scaffold_256481_60
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(74462..76750)
DNA (2289bp) protein (763aa)
WD40 repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQ66_SINAD
WD40 repeat-containing protein
WD40 repeat-containing protein {ECO:0000313|EMBL:AGA31519.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 31-60 of 71 in total

View Taxonomy