ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_23544_24

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(30001..30582)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCU8_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 51.1
  • Coverage: 186.0
  • Bit_score: 196
  • Evalue 1.40e-47
DNA-directed RNA polymerase subunit sigma24 similarity KEGG
DB: KEGG
  • Identity: 51.1
  • Coverage: 186.0
  • Bit_score: 196
  • Evalue 3.90e-48
DNA-directed RNA polymerase specialized sigma subunit, sigma24 {ECO:0000313|EMBL:AGA26695.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.1
  • Coverage: 186.0
  • Bit_score: 196
  • Evalue 1.90e-47

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Singulisphaera acidiphila → Singulisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 582
GTGAAAGACGACCTGATCGAACGGCTGAATGGCGGGGACATGGAGGCGGCCGCACGGGTGTTCGCCACCTACGAGCCCTACTTGCGCATGGCGGTCCGACGGCAACTGAGCGGGCACCTCCGGTCGAAGCTCGACTCGATGGATGTCGTCCAATCCATCTGGGCGAACGTGCTCCGCGGGTTTCGCGGAACCGGCTGGCATTTCAACGACCGCGAGCACGTCAAAGCCTTCCTGATGCGGGCCGTCAAGAATCGCCTCATCGATCGACGCCGGCAGTTCAACCGCGCCCTCGAGCTCGAGCAGCCCCTGTCGGCGACGGCCGCGAGCGACCTCCCGAGCTCCAAGCAGGCCCGGCCCAGCGAGCTCGTCCAGGGCGAGGAACTCTGGGAACGGATCCTCGAGCTCTGCCCGCCGTCGCATCGGGAGGTCGTACGCCTCAAACGACAGGGGCTTTCCCTCGCCGAGATCGCCGCTCGGACCGGATTCCACGTGGGGAGCGTCCGCCGAATCCTCTACGACCTGGCGAAGCGCATGGCCGACGTCCGCAAGGGCGCGATGGCTCCTCCCCCACCCCGGGTTTGA
PROTEIN sequence
Length: 194
VKDDLIERLNGGDMEAAARVFATYEPYLRMAVRRQLSGHLRSKLDSMDVVQSIWANVLRGFRGTGWHFNDREHVKAFLMRAVKNRLIDRRRQFNRALELEQPLSATAASDLPSSKQARPSELVQGEELWERILELCPPSHREVVRLKRQGLSLAEIAARTGFHVGSVRRILYDLAKRMADVRKGAMAPPPPRV*