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berkeley_reactor_200306_planktonic_scaffold_162563

Search features with annotation key words

Displaying items 31-60 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_162563_30
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

36348..37310
DNA (963bp) protein (321aa)
Ketose-bisphosphate aldolase {ECO:0000313|EMBL:EEF57571.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EEF57571.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
fructose-1,6-bisphosphate aldolase (EC:4.1.2.13)
Ketose-bisphosphate aldolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XRG6_9BACT
berkeley_reactor_200306_planktonic_scaffold_162563_31
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(37366..37686)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK14_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59837.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_162563_32
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

37983..39806
DNA (1824bp) protein (608aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK19_9BACT
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein {ECO:0000313|EMBL:EEF59842.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pyruvate ferredoxin oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_162563_33
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

39830..40759
DNA (930bp) protein (310aa)
Thiamine pyrophosphate protein domain protein TPP-binding n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK20_9BACT
Thiamine pyrophosphate protein domain protein TPP-binding {ECO:0000313|EMBL:EEF59843.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pyruvate ferredoxin oxidoreductase
berkeley_reactor_200306_planktonic_scaffold_162563_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

40865..41368
DNA (504bp) protein (168aa)
Regulatory protein, FmdB family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQS3_9BACT
Regulatory protein, FmdB family {ECO:0000313|EMBL:EEF57780.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
CxxC_CxxC_SSSS superfamily protein
berkeley_reactor_200306_planktonic_scaffold_162563_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

41486..41944
DNA (459bp) protein (153aa)
NUDIX hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQS2_9BACT
NUDIX hydrolase {ECO:0000313|EMBL:EEF57779.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
mutT/nudix family protein
berkeley_reactor_200306_planktonic_scaffold_162563_36
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

41974..43167
DNA (1194bp) protein (398aa)
major facilitator superfamily protein id=12556402 bin=CNBR_ACIDO species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_162563_37
Algoriphagus machipongonensis, Algoriphagus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

43164..44504
DNA (1341bp) protein (447aa)
Xaa-Pro aminopeptidase n=1 Tax=Algoriphagus machipongonensis RepID=A3HWY2_9BACT
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EAZ81105.1}; TaxID=388413 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Algoriphagus.;" source="Algoriphagus machipongonensis.;"
Xaa-Pro aminopeptidase
berkeley_reactor_200306_planktonic_scaffold_162563_38
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

Not on your lists

comp(44596..44856)
DNA (261bp) protein (87aa)
DNA polymerase beta domain protein region n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M4U9_GEODF
DNA polymerase beta domain-containing protein region
Tax=GWB2_Planctomycetes_41_19_curated
berkeley_reactor_200306_planktonic_scaffold_162563_39
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44853..45191)
DNA (339bp) protein (113aa)
Nucleotidyltransferase substrate binding protein, HI0074 family n=1 Tax=Desulfotignum phosphitoxidans DSM 13687 RepID=S0FS70_9DELT
nucleotidyltransferase substrate-binding protein
Tax=GWD2_Desulfuromonadales_61_12_curated
berkeley_reactor_200306_planktonic_scaffold_162563_40
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

45359..47521
DNA (2163bp) protein (721aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Threonine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0E5_9BACT
threonyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_162563_41
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47545..48342
DNA (798bp) protein (266aa)
Uncharacterized protein n=2 Tax=Rhodobacter capsulatus RepID=V8GYM4_RHOCA
Putative uncharacterized protein {ECO:0000313|EMBL:AAC16115.1}; TaxID=1061 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (Rhodopseudomonas capsulata).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_42
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48345..48809
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RR53_RHORT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC23392.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
berkeley_reactor_200306_planktonic_scaffold_162563_43
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

49019..50038
DNA (1020bp) protein (340aa)
Glycoside hydrolase family 43 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQQ1_9BACT
Glycoside hydrolase family 43 {ECO:0000313|EMBL:EEF57833.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_162563_44
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

50096..52135
DNA (2040bp) protein (680aa)
Sodium/hydrogen exchanger n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCQ5_9BACT
Sodium/hydrogen exchanger {ECO:0000313|EMBL:EEF62251.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
sodium/hydrogen exchanger
berkeley_reactor_200306_planktonic_scaffold_162563_45
unknown

Not on your lists

52460..52690
DNA (231bp) protein (77aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_162563_46
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

52730..53239
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKB5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59753.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_162563_47
unknown

Not on your lists

comp(53294..53905)
DNA (612bp) protein (204aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_162563_48
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

53912..54751
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV84_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21897.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_49
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(55041..55586)
DNA (546bp) protein (182aa)
Planctomycete cytochrome C n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQW5_9BACT
Planctomycete cytochrome C {ECO:0000313|EMBL:EEF57742.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_50
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55649..56941)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4NB51_9CAUL
Putative unsaturated glucuronyl hydrolase {ECO:0000313|EMBL:KFC76327.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_51
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(56938..60636)
DNA (3699bp) protein (1233aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA polymerase III, alpha subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPL1_9BACT
DNA polymerase III subunit alpha
berkeley_reactor_200306_planktonic_scaffold_162563_52
GWC2_Verrucomicrobia_42_7_curated, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(60684..61706)
DNA (1023bp) protein (341aa)
Glycosyl transferase family 9 id=4577707 bin=GWF2_Verrucomicrobia_51_19 species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
glycosyl transferase family 9
Tax=GWC2_Verrucomicrobia_42_7_curated
berkeley_reactor_200306_planktonic_scaffold_162563_53
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(61782..63593)
DNA (1812bp) protein (604aa)
ABC-type multidrug transport system, ATPase and permease component id=4049088 bin=GWF2_Lentisphaerae_57_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
Tax=GWF2_Lentisphaerae_57_35_curated
berkeley_reactor_200306_planktonic_scaffold_162563_54
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(63599..64420)
DNA (822bp) protein (274aa)
Glycosyl transferase family 2 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JGU9_ANAD2
family 2 glycosyl transferase
Tax=CG_Arma_02
berkeley_reactor_200306_planktonic_scaffold_162563_55
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64491..65621)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B38934
Uncharacterized protein {ECO:0000313|EMBL:ETR76364.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_162563_56
unknown

Not on your lists

comp(65718..66809)
DNA (1092bp) protein (364aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_162563_57
GWF2_Verrucomicrobia_51_19_curated, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

67114..68112
DNA (999bp) protein (333aa)
WaaQ id=4577708 bin=GWF2_Verrucomicrobia_51_19 species=Proteus mirabilis genus=Proteus taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
waaQ; heptosyl III transferase WaaQ
Tax=GWF2_Verrucomicrobia_51_19_curated
berkeley_reactor_200306_planktonic_scaffold_162563_58
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

68139..68933
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037F6CAE
wcaA; glycosyltransferase
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_162563_59
CG_Verruco_01, Verrucomicrobia, Bacteria

Not on your lists

68926..70104
DNA (1179bp) protein (393aa)
id=4539425 bin=GWF2_Verrucomicrobia_51_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Verrucomicrobia_51_19 organism_group=Verrucomicrobia organism_desc=Good +
glycosyltransferase
Tax=CG_Verruco_01
Displaying items 31-60 of 77 in total

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