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berkeley_reactor_200306_planktonic_scaffold_12886_20

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(25048..26799)

Top 3 Functional Annotations

Value Algorithm Source
Type II secretion system protein E n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM22_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 577.0
  • Bit_score: 904
  • Evalue 4.00e-260
Type II secretion system protein E {ECO:0000313|EMBL:EEF59150.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.3
  • Coverage: 577.0
  • Bit_score: 904
  • Evalue 5.60e-260
type II secretion system protein E similarity KEGG
DB: KEGG
  • Identity: 48.3
  • Coverage: 526.0
  • Bit_score: 491
  • Evalue 3.00e-136

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1752
ATGGCCTTTAACCCGGTAAGAAATCTGGTTGCGACGGTCGCGGAAGCGTCACCGGCGCAATTCGATAATTGGCGCAAATCGTGGCGCGCGGCGGTGGACGGCGGTTCCGCCGAGCCGCTGCTGACCTTTGTGGCGCGCGAACGCGGCGTGGCCGAGGACGTTTTCGTGCAACGGCTCGCGGCGGCGCTGGGCTGGCCGTATTTGGACCTGCCGAAACTCACGGTCGAAAACGAGGTGCGCAACAAGATTTCCACCAAGATCGCCTTTCAGTATTTCGTCCTGCCGGTGGCGTTGAACAATGGCGTTTTGCAGATCGCGGTCAGCGATCCGTTTGACGCGGCGATGATGAACGCCGTCCGCTTCAACGCCAAAATGCCGGTGAGTTTTGCCCTGGCCACGCGCACGGAAATCGAAAAGGCGCTGAAAAAATATTACGGCGTAGGCGCCGAAACGCTCGATGAAATGGGCGAAGGCGAGCCGATGGAACTGGAACTGGCTTACGACAAGGAAATCACCGAGGGCGACCAGGAAGCCAGCGTCATCAAATTCGTCAACCAGATCATCTGGGAAGCGTTCAAAGACCGCGCCACGGACATCCATTTCGAGCCGCAGGAAGACGAGCTGCGCATTCGCAACCGCATTGACGGCATTCTGCACCAGATTCCGCTGCCGCCCACGCTCAAGCGGTTTCAATCCGCCATCATCTCGCGCATCAAGGTGATGAGCGGCATGAACATTTCCGAGAAACGCCTGCCGCAGGACGGCCGCATCAACGTGCGCATCAAGGGCGAGGAAATTGACATCCGCGTCTCCACCGTGCCCACGGTTTACGGCGAATCGGTCTCGCTGCGTTTGCTGACGCGCGGCAAAATTTTTCTCTCGCTCGACAAGCTCGGTTTTTCGCCGCTGGAAGAAGCCGCCATTCGCGAAATCATCGTCAAACCGCACGGCATTTTCCTCGTCACCGGCCCGACCGGTTCCGGCAAATCCACGTCGCTTTACGCGTTTCTCTCCGCCATCAACTCGGTTCACAAGCGCATCATCACCGTTGAGGAACCGGTGGAATACGAACTGAAAGGCATCAATCAAATCGCCGTGCGCCCGGAAATCGGCCTCACGTTCGCGATGGGTTTGCGCCACATTTTGCGCCAGGACCCGAACGTGGTGATGGTCGGGGAAATTCGCGACCAGGAAACGGCGGACATCGCCATTCGCGCGTCGCTGACCGGTCACCTGGTTTTCTCCACGCTGCACACGAATGATGCGCCCAGCGCGTTCACGCGTTTGACGGACATGGGCATCGAACCGTTTTTGATCGCGTCGTCCGTGGAAGCGATTCAGGCGCAGCGCCTGGTGCGCACGATTTGTCCGCACTGCAAGACGGAGCAGAAGGTGGATCGCGATTATCTGCACAAGATTGGTTTTCCGGAGGCGGACATTGAAACCGCCAAAATCTGGCACGGCGCCGGTTGCGACGAATGCCGCCAGCAGGGTTACCAGGGACGCAAAGGCATTTACGAACTGCTCATCGTCACCGAGGCGCTGCGTCCGCTGGTGATGAACCGCGCGCCCGCGTCCACCATCGCGCAGCGCGCCATCGAAAACGGCATGCGCACGCTCCGCACGGACGGCTGGAACAAAGTGAAGGCGGGCGTCACGACGATTGAGGAAGTTTTGCGCGTCACCCAGATGGAGGAACACATGGAAGCGCTCGCCGGCGGCGAGGACCGAACCCAGTTTATCGCGCGGTGA
PROTEIN sequence
Length: 584
MAFNPVRNLVATVAEASPAQFDNWRKSWRAAVDGGSAEPLLTFVARERGVAEDVFVQRLAAALGWPYLDLPKLTVENEVRNKISTKIAFQYFVLPVALNNGVLQIAVSDPFDAAMMNAVRFNAKMPVSFALATRTEIEKALKKYYGVGAETLDEMGEGEPMELELAYDKEITEGDQEASVIKFVNQIIWEAFKDRATDIHFEPQEDELRIRNRIDGILHQIPLPPTLKRFQSAIISRIKVMSGMNISEKRLPQDGRINVRIKGEEIDIRVSTVPTVYGESVSLRLLTRGKIFLSLDKLGFSPLEEAAIREIIVKPHGIFLVTGPTGSGKSTSLYAFLSAINSVHKRIITVEEPVEYELKGINQIAVRPEIGLTFAMGLRHILRQDPNVVMVGEIRDQETADIAIRASLTGHLVFSTLHTNDAPSAFTRLTDMGIEPFLIASSVEAIQAQRLVRTICPHCKTEQKVDRDYLHKIGFPEADIETAKIWHGAGCDECRQQGYQGRKGIYELLIVTEALRPLVMNRAPASTIAQRAIENGMRTLRTDGWNKVKAGVTTIEEVLRVTQMEEHMEALAGGEDRTQFIAR*