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berkeley_reactor_200306_planktonic_scaffold_49371_13

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(23825..24115)

Top 3 Functional Annotations

Value Algorithm Source
Histone family protein DNA-binding protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBS4_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 80.2
  • Coverage: 96.0
  • Bit_score: 149
  • Evalue 1.60e-33
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EEF62959.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 96.0
  • Bit_score: 149
  • Evalue 2.30e-33
hupB; transcriptional dual regulator HU-beta similarity KEGG
DB: KEGG
  • Identity: 67.4
  • Coverage: 95.0
  • Bit_score: 121
  • Evalue 7.90e-26

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 291
ATGGCAAAAGCCCTGACTAAATCACAAATTATCGCCTCCGTCGCCGAGTCGGCGGAGATCACCAAAAAACAAGCCGCCACCGCCCTGGAAGCGCTGGTGAATCTGGCCTACAAGAACGCCAAGAACAGCTTCACGCTTCCGGGTCTCGGAAAGCTGGTGCTGGTCAACCGCAAAGCCCGCATGGGCCGCAATCCAGCGACGGGTGAGCAAATCAAGATTGCCGCCAAGCGCGTGGTTAAATTCCGCGTCGCCAAAGCCGCGAAGGACGCCATTCTGGGCGCCAAGAAATAG
PROTEIN sequence
Length: 97
MAKALTKSQIIASVAESAEITKKQAATALEALVNLAYKNAKNSFTLPGLGKLVLVNRKARMGRNPATGEQIKIAAKRVVKFRVAKAAKDAILGAKK*