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berkeley_reactor_200306_planktonic_scaffold_255293_31

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(33126..33995)

Top 3 Functional Annotations

Value Algorithm Source
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.3
  • Coverage: 277.0
  • Bit_score: 362
  • Evalue 3.90e-97
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIS3_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 65.3
  • Coverage: 277.0
  • Bit_score: 362
  • Evalue 2.80e-97
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase similarity KEGG
DB: KEGG
  • Identity: 41.5
  • Coverage: 282.0
  • Bit_score: 220
  • Evalue 4.90e-55

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 870
ATGAAAATCATCCGCGCGGAACATCTGGGCATGTGTTTCGGGGTGCGGGACGCCATCAACCTGGCGTTGGCAACCGCGAAACACGAGCCACTAACCATCCTGGGCGATCTGGTCCACAACGAAACCGTGCTGGCGGAATTGCGGGCCAGAAAAATCCGCATCGAACAGCAACCGGACACCGCGCAAACCCGCACCGTGATGATCACGGCCCACGGCGCGTCCGAACGCAAGCTGGCCGCAACCCGCAATCGGGGACACAACGTGCTGGAAGCCACCTGCCCGCTCGTTCACGTGGCGCATCGCAGTTTGCAAAAACTCGTCGCGCAAGGGTTTCATCCCGTGATCATCGGCAAACGCGGTCATGTGGAGGTCCGCGGCATGACGGAAGATTTGGATGCTTACGATGTGGTGTTGAGCGAGGAGGAGGTGAACCATTTGGCGGCGCGTCCCCGTTTTGGTGTTATCGCCCAGACCACCCAGCCGATTGATAAAGTCCGGCAGTTGGTGCAATTGCTGCGGGAGCATTTCCCCGCGTCGGAGGTTTGTTTCAAGGACACCGTTTGTCAGCCGACCAAGCAGCGGCAAAACGCCGCAGTCGAAATCGCCAGGCAAAGCGATGTCGTTGTGGTGATTGGCGGGGCGAACAGCAACAACACGCATGAACTGGTCAAAACCTGTTCGCGATTCTGTCCACGAGTGCGTCATGTTCAAACGGCAGATGATCTGGTCGCGGATTGGTTTCGTCCCGAGGACACGGTGGGAATCACGGCGGGAACGTCCACGCCGGACAGGCTGATCCAGCAGGTGGAAAAGCGCTTGCGGACGATGGCATTGATCAGAACTCATCGGCACGCCCCTATTTCAGCATGA
PROTEIN sequence
Length: 290
MKIIRAEHLGMCFGVRDAINLALATAKHEPLTILGDLVHNETVLAELRARKIRIEQQPDTAQTRTVMITAHGASERKLAATRNRGHNVLEATCPLVHVAHRSLQKLVAQGFHPVIIGKRGHVEVRGMTEDLDAYDVVLSEEEVNHLAARPRFGVIAQTTQPIDKVRQLVQLLREHFPASEVCFKDTVCQPTKQRQNAAVEIARQSDVVVVIGGANSNNTHELVKTCSRFCPRVRHVQTADDLVADWFRPEDTVGITAGTSTPDRLIQQVEKRLRTMALIRTHRHAPISA*