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berkeley_reactor_200306_biofilm_scaffold_85493_32

Organism: 2019_SCN_bioreactor_200211_biofilm_Singulisphaera_acidiphila_69_8

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: comp(33619..35292)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAT7_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 93.4
  • Coverage: 557.0
  • Bit_score: 1018
  • Evalue 1.80e-294
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 93.4
  • Coverage: 557.0
  • Bit_score: 1018
  • Evalue 5.10e-295
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.4
  • Coverage: 557.0
  • Bit_score: 1018
  • Evalue 2.60e-294

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Taxonomy

Singulisphaera acidiphila → Singulisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1674
ATGGAAAAGCTGGACGAGGGCCTCAAGACGCTCCTCGAGTTGGGCAAACGGCGCGGGTTTTTGACCTTCGATCAGGTCAACGACTTCTTGCCCGACGAGGCGAGCAGCCCGGAGAAGATCCACGGCCTGCTCGAATCGCTCGACGAGTTGGGCATCGAACTGATCAACGAAGACGAGGCCGAGTCGCGCCTGCTCGCCTCCGGCGAGATCGACGACGAGCCCGAAGAACTCGCCGACGAGCCGCTCGACGACGACGAGGATTCCGAACTCACGCCGGAAGACCTCGATGAAATCTCCCGCCGGATCGACGACCCGGTCCGGATGTACCTGACCCAGATGGGCGAGATCCCCCTGCTCACCCGCGAGCAGGAGATCAACCTCGCCAAGAAGATCGAGATCACCCGCAAGCGCTTCCGCCGGAAGGTGCTGGAGTGCCACTTCGCCCTGGCGCTGGTGGTCGACGTCCTCAAGAAGGTGAACGAAGGCGAGCTGCCGTTCGACCGGACGGTGAAGGTCTCCGTGACCGAGAACCTGGAGAAAGACCAGATCCTCGGCCGGATGCCCCACAACCTGGTCACGCTCGTCCACCTGATGGACTGCAACAACCGCGACTTCCGCCTCTACGTCCGCGAACGCGACCGCTCGGCCCGCCGCCAATTCTCGGCCGACCTGAAGAACCGCCGCCGCAAGGCGGTGAACCTGGTCGAGGAGCTGTCGATCCGGACCCAGAAGGTCCAGCCGCTGATGAAGCGCCTGGAGCAGGTCTCGGGCCGGATGGGCGAGCTCATGCACCAGCTCGCCGAGCACCGCGCCGGCCGGGGCGGGAAGGAAGACAGGTCGAACCTTCAGAAAGAGCTGAAGGACCTGATGCGGATCACCCTGGAGACGCCCGAGAGCCTCCGCAAGCGGGTCGAGGCGATGAACGCCCGGTTCCGCGAGTACGAGCAGGCCAAGCGGGAACTCTCCGGCGGTAACCTCCGGCTGGTCGTCTCGATCGCCAAGAAGTACCGCAACCGCGGCCTCTCGTTCCTCGACCTGATCCAGGAGGGGAACACCGGCCTGATGCGGGCCGTCGACAAGTACGAGTACCGCCGCGGCTACAAGTTCAGCACGTACGCGACGTGGTGGATCCGCCAGGCGATCACCCGCGCGATCGCCGACCAGGCCCGGACGATCCGCATCCCCGTCCACATGATCGAGACGATGTCGAAGCTCCGCAACGTCTCGAAGAAGCTGCTCCAGGAGAAGGGCCGCGAGCCGACCATCGAGGAGACCGCCAAGGCGGCCAACATCTCGATCGAGGAAACCCGGCGGGTGATGAAGATCAGCCGCCACCCGATCAGCCTCGACCGGCCCGTCGGCGAGAGCGAAGACAGCTACTTCGGCGACTTCATCGAAGACGAGGCCGCCGAGAGCCCGATCAACGCCGCCACGCAGGAGATGCTCAAAGAGAAGATCGACCAGGTGCTCAAGACCCTCACCTACCGCGAGCGCGAGATCATCAAACTCCGCTACGGCCTGGGCGACGGCTACACCTACACCCTCGAAGAGGTCGGCCGGATCTTCAAAGTGACCCGCGAACGCGTCCGGCAGATCGAGGCCAAGGCCGTCCGCAAGTTACAGCACCCTGTTAGAAGCCGGCAGCTCGAGGGTTTCCTTGAGAGTACCGGTTGA
PROTEIN sequence
Length: 558
MEKLDEGLKTLLELGKRRGFLTFDQVNDFLPDEASSPEKIHGLLESLDELGIELINEDEAESRLLASGEIDDEPEELADEPLDDDEDSELTPEDLDEISRRIDDPVRMYLTQMGEIPLLTREQEINLAKKIEITRKRFRRKVLECHFALALVVDVLKKVNEGELPFDRTVKVSVTENLEKDQILGRMPHNLVTLVHLMDCNNRDFRLYVRERDRSARRQFSADLKNRRRKAVNLVEELSIRTQKVQPLMKRLEQVSGRMGELMHQLAEHRAGRGGKEDRSNLQKELKDLMRITLETPESLRKRVEAMNARFREYEQAKRELSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETMSKLRNVSKKLLQEKGREPTIEETAKAANISIEETRRVMKISRHPISLDRPVGESEDSYFGDFIEDEAAESPINAATQEMLKEKIDQVLKTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFLESTG*