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cn_combo_scaffold_23_35

Organism: CN-SCN_Rubrivivax_131x

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 12 / 38
Location: 49464..50021

Top 3 Functional Annotations

Value Algorithm Source
Sigma factor regulator FecR; EC=2.6.1.16;; TaxID=306 species="Bacteria; Proteobacteria.;" source="Pseudomonas sp.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.9
  • Coverage: 182.0
  • Bit_score: 188
  • Evalue 6.50e-45
sigma factor regulator FecR n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI00023764F8 similarity UNIREF
DB: UNIREF100
  • Identity: 70.2
  • Coverage: 151.0
  • Bit_score: 205
  • Evalue 4.80e-50
iron dicitrate transport regulator FecR similarity KEGG
DB: KEGG
  • Identity: 54.9
  • Coverage: 182.0
  • Bit_score: 188
  • Evalue 1.30e-45

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Taxonomy

Pseudomonas sp. → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
GTGACGCGCTCGCGCATGTTCGACGAAGCCGGGCAGCACGAGCGGACGCGTCGCGTCGGCGCGCGCACGCTGGGCCTCGTCAACGACGGCGCCTGGGCGCTGGACTGGAGCCCGGCCGTCGAGGCGCTGCAGGACGCGCAGCGCCTCGACGTCATCGGCCGCGGCACCGGGCTGGCGGTGGCGATGGAGGCGGCGCTGAAGGTCAAGGAGGTCTGCGGCATCCACGCCGAGGGCTATTCCGGCGCCGAGGTCCAGCACGGCCCGATGGCCCTGGTCGAGGCGGGCTTCCCGATGCTCGTGCTCGCGCCCCGAGGCCCGGCGCAGCCGGGGCTGCTGCAGCTGGCTGCGCAGATGGGCGCACGCGGTGCGCGCGTGCTGCTGGCCGCGCCGCCGGGAACGCTCGGGGCCGTGTTTCCGCTGGCCTGCGCTGCCCACGAGGACCTCGACCCGATCGCCGTGGCGCAGAGCCTCTACCGCATGGTCGAGGCCCTGGCCCAGGCGCGCGGGCTCGATCCGGACCGCCCGCGCCCCCTCGCCAAGGTCACGTGCACCGAATGA
PROTEIN sequence
Length: 186
VTRSRMFDEAGQHERTRRVGARTLGLVNDGAWALDWSPAVEALQDAQRLDVIGRGTGLAVAMEAALKVKEVCGIHAEGYSGAEVQHGPMALVEAGFPMLVLAPRGPAQPGLLQLAAQMGARGARVLLAAPPGTLGAVFPLACAAHEDLDPIAVAQSLYRMVEALAQARGLDPDRPRPLAKVTCTE*