ggKbase home page

SCNpilot_cont_1000_p_scaffold_1860_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1860_curated_1
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(449..919)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225B50C
Uncharacterized protein {ECO:0000313|EMBL:AIK96284.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
SCNpilot_cont_1000_p_scaffold_1860_curated_2
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

Not on your lists

comp(1057..1332)
DNA (276bp) protein (92aa)
Uncharacterized protein n=3 Tax=Legionella pneumophila RepID=Q5WS34_LEGPA
hypothetical protein
Tax=RBG_16_Spirochaetes_49_21_curated
SCNpilot_cont_1000_p_scaffold_1860_curated_3
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1329..1763)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RJV5_BLASD
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1860_curated_4
unknown

Not on your lists

2565..2705
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1860_curated_5
unknown

Not on your lists

2654..2890
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1860_curated_6
R_Gammaproteobacteria_42_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2829..3629
DNA (801bp) protein (267aa)
Putative uncharacterized protein id=2165793 bin=GWE2_Gammaproteobacteria_37_16 species=Nitrobacter sp. Nb-311A genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE2_Gammaproteobacteria_37_16 organism_group=Gammaproteobacteria organism_desc=Looks good, but small
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_42_13_curated
SCNpilot_cont_1000_p_scaffold_1860_curated_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3626..4660
DNA (1035bp) protein (345aa)
Putative uncharacterized protein id=4536999 bin=GWC2_Alphaproteobacteria_42_16 species=Nitrobacter winogradskyi genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1860_curated_8
Anaerobaculum hydrogeniformans, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

4814..6352
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Anaerobaculum hydrogeniformans ATCC BAA-1850 RepID=D3L1P5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFD25069.1}; TaxID=592015 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaerobaculum hydrogeniformans ATCC BAA-1850.;"
PIF1 helicase
SCNpilot_cont_1000_p_scaffold_1860_curated_9

Not on your lists

6397..6831
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EJX7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10528.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1860_curated_10

Not on your lists

6954..7799
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FFF1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE09415.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_1860_curated_11

Not on your lists

7910..9052
DNA (1143bp) protein (381aa)
Uncharcterized ATPase n=1 Tax=uncultured bacterium RepID=C5JAM9_9BACT
Uncharcterized ATPase {ECO:0000313|EMBL:CAX83822.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K07133
SCNpilot_cont_1000_p_scaffold_1860_curated_12
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9076..9417)
DNA (342bp) protein (114aa)
id=4444423 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1860_curated_13
unknown

Not on your lists

comp(9417..9818)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1860_curated_14

Not on your lists

comp(9846..10121)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWN9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10206.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_1860_curated_15
unknown

Not on your lists

comp(10108..10449)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1860_curated_16

Not on your lists

10710..15341
DNA (4632bp) protein (1544aa)
Conjugal transfer relaxase TraA n=1 Tax=uncultured bacterium RepID=K2DX40_9BACT
Conjugal transfer relaxase TraA {ECO:0000313|EMBL:EKE10421.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
traA; Ti-type conjugative transfer relaxase TraA
SCNpilot_cont_1000_p_scaffold_1860_curated_17
RBG_16_Planctomycetes_59_8_curated, Planctomycetes, Bacteria

Not on your lists

15488..15883
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036F5482
transposase IS4
Tax=RBG_16_Planctomycetes_59_8_curated
SCNpilot_cont_1000_p_scaffold_1860_curated_18
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16045..16326
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Leptospira santarosai str. 2000030832 RepID=M6FXW6_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:GAJ37608.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1860_curated_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

17693..17962
DNA (270bp) protein (90aa)
4'-phosphopantetheinyl transferase; K06133 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
4'-phosphopantetheinyl transferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XT00_9BACT
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:EEF57035.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCNpilot_cont_1000_p_scaffold_1860_curated_20
Francisella tularensis, Francisella, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18131..18940
DNA (810bp) protein (270aa)
Predicted protein n=1 Tax=Francisella novicida GA99-3549 RepID=A7JFE2_FRANO
Transposase DDE domain protein {ECO:0000313|EMBL:AJJ47284.1}; TaxID=119856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella.;" source="Francisella tularensis subsp. tularensis.;"
transposase IS4 family protein
Displaying 20 items

View Taxonomy