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SCN18_25_8_15_R4_B_scaffold_71

Search features with annotation key words

Displaying items 121-150 of 469 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_71_118
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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111532..112767
DNA (1236bp) protein (412aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
tryptophan synthase subunit beta n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F2A96A
tryptophan synthase subunit beta
SCN18_25_8_15_R4_B_scaffold_71_119
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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112873..113292
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B68970
DUF3224 domain containing protein {ECO:0000313|EMBL:KGQ19189.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
SCN18_25_8_15_R4_B_scaffold_71_120
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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113289..114104
DNA (816bp) protein (272aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
tryptophan synthase subunit alpha (EC:4.2.1.20)
tryptophan synthase subunit alpha n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030A6963
SCN18_25_8_15_R4_B_scaffold_71_121
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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114223..115113
DNA (891bp) protein (297aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUJ0_PSEUU
acetyl-CoA carboxylase, carboxyl transferase subunit beta
SCN18_25_8_15_R4_B_scaffold_71_122
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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115110..116471
DNA (1362bp) protein (454aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Phosphoglucosamine mutase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7USI4_PSEUP
glmM; phosphoglucosamine mutase
SCN18_25_8_15_R4_B_scaffold_71_123
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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116549..117487
DNA (939bp) protein (313aa)
flavonol synthase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00036338F9
Flavonol synthase {ECO:0000313|EMBL:KGM55633.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
flavonol synthase
SCN18_25_8_15_R4_B_scaffold_71_124
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(117549..118220)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4FC3D
Uncharacterized protein {ECO:0000313|EMBL:KKD04018.1}; TaxID=1415558 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_71_125
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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118289..119044
DNA (756bp) protein (252aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
tpiA; triosephosphate isomerase (EC:5.3.1.1)
triosephosphate isomerase n=1 Tax=Xanthomonadaceae RepID=UPI00029ACF6C
SCN18_25_8_15_R4_B_scaffold_71_126
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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119056..119469
DNA (414bp) protein (138aa)
Preprotein translocase, SecG subunit id=2698519 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
secG; preprotein translocase subunit SecG
Tax=GWF1_Xanthomonadales_69_6_curated
SCN18_25_8_15_R4_B_scaffold_71_trna_2
unknown

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119504..119585
DNA (82bp)
transferRNA Leu
SCN18_25_8_15_R4_B_scaffold_71_127
CN-SCN_Rhodanobacter_45x, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(119665..120225)
DNA (561bp) protein (187aa)
Nicotinamide mononucleotide transporter PnuC n=1 Tax=Rhodanobacter denitrificans RepID=M4NFM8_9GAMM
Aminotransferase {ECO:0000313|EMBL:KJV36071.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
nicotinamide mononucleotide transporter PnuC
SCN18_25_8_15_R4_B_scaffold_71_128
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(120225..122393)
DNA (2169bp) protein (723aa)
TonB-dependent siderophore receptor n=1 Tax=Rhodanobacter sp. 115 RepID=I4W251_9GAMM
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EIL93542.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
TonB-dependent siderophore receptor
SCN18_25_8_15_R4_B_scaffold_71_129
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(122579..123712)
DNA (1134bp) protein (378aa)
Aminoglycoside phosphotransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W252_9GAMM
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EIL93543.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative homoserine kinase type II (protein kinase fold)
SCN18_25_8_15_R4_B_scaffold_71_130
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(123780..124973)
DNA (1194bp) protein (398aa)
Cyclopropane fatty acyl phospholipid synthase {ECO:0000313|EMBL:KGI77833.1}; EC=2.1.1.79 {ECO:0000313|EMBL:KGI77833.1};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
cyclopropane fatty acyl phospholipid synthase (EC:2.1.1.79)
cyclopropane fatty acyl phospholipid synthase n=1 Tax=Dyella ginsengisoli RepID=UPI00034CB89B
SCN18_25_8_15_R4_B_scaffold_71_131
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(125310..125759)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI00035EC4CB
marR family protein
MarR family protein {ECO:0000313|EMBL:AIO38824.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
SCN18_25_8_15_R4_B_scaffold_71_132
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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125864..126343
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Caldimonas manganoxidans RepID=UPI000376C0DF
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:EGP06328.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_71_133
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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126356..126706
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM78 RepID=J3IBS3_9PSED
RNA signal recognition particle 4.5S RNA {ECO:0000313|EMBL:KFX68222.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
Protein of unknown function DUF1428
SCN18_25_8_15_R4_B_scaffold_71_134
unknown

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126699..126818
DNA (120bp) protein (40aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003813166
SCN18_25_8_15_R4_B_scaffold_71_135
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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126821..127285
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000374E1EE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKO04735.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCN18_25_8_15_R4_B_scaffold_71_136
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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127282..127920
DNA (639bp) protein (213aa)
deaminase n=1 Tax=Caldimonas manganoxidans RepID=UPI0003749D8E
deaminase-reductase domain-containing protein
Bifunctional deaminase-reductase domain protein {ECO:0000313|EMBL:ABY35668.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl).;"
SCN18_25_8_15_R4_B_scaffold_71_137
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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127954..128349
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003767791
Aldehyde-activating protein {ECO:0000313|EMBL:KGM35470.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_71_138
unknown

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128753..128842
DNA (90bp) protein (30aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_71_139
unknown

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128852..128950
DNA (99bp) protein (33aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_71_140
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

128947..130698
DNA (1752bp) protein (584aa)
atkA; AtkA (EC:3.6.3.12)
Potassium-transporting ATPase A chain {ECO:0000255|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000255|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000255|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000255|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000255|HAMAP-Rule:MF_00275}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
Potassium-transporting ATPase A chain n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=ATKA_LARHH
SCN18_25_8_15_R4_B_scaffold_71_141
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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130710..132779
DNA (2070bp) protein (690aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285, ECO:0000256|SAAS:SAAS00017871};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
Potassium-transporting ATPase B chain n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NXM8_CHRVO
kdpB; potassium-transporting ATPase subunit B
SCN18_25_8_15_R4_B_scaffold_71_142
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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132796..133401
DNA (606bp) protein (202aa)
potassium-transporting ATPase subunit C n=1 Tax=Acidovorax radicis RepID=UPI00023785E2
K+-transporting ATPase C
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCN18_25_8_15_R4_B_scaffold_71_143
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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133437..134216
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SM58_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96192.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCN18_25_8_15_R4_B_scaffold_71_144
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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134265..136937
DNA (2673bp) protein (891aa)
Osmosensitive K+ channel signal transduction histidine kinase n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z382_9NEIS
osmosensitive K+ channel signal transduction histidine kinase
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCN18_25_8_15_R4_B_scaffold_71_145
SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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136934..137617
DNA (684bp) protein (228aa)
Two-component system, OmpR family, KDP operon response regulator KdpE n=2 Tax=Delftia acidovorans RepID=S2WEZ6_DELAC
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEF87712.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCN18_25_8_15_R4_B_scaffold_71_trna_13
unknown

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comp(137985..138057)
DNA (73bp)
transferRNA Phe
Displaying items 121-150 of 469 in total

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