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SCN18_25_8_15_R4_B_scaffold_71

Search features with annotation key words

Displaying items 211-240 of 469 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R4_B_scaffold_71_206
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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197735..198397
DNA (663bp) protein (221aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
23S rRNA methyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000316E744
rrmJ; ribosomal RNA large subunit methyltransferase J
SCN18_25_8_15_R4_B_scaffold_71_207
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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198428..200323
DNA (1896bp) protein (632aa)
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H386_METFK
SCN18_25_8_15_R4_B_scaffold_71_208
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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200393..201286
DNA (894bp) protein (298aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
Dihydropteroate synthase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UT12_PSEUP
dihydropteroate synthase
SCN18_25_8_15_R4_B_scaffold_71_209
unknown

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201337..201762
DNA (426bp) protein (142aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_71_210
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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201851..204205
DNA (2355bp) protein (785aa)
TonB-dependent receptor n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q221D3_RHOFD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABD68370.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCN18_25_8_15_R4_B_scaffold_71_211
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(204250..205329)
DNA (1080bp) protein (360aa)
alkane 1-monooxygenase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B374BA
Uncharacterized protein {ECO:0000313|EMBL:KFN41697.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
alkane hydroxylase
SCN18_25_8_15_R4_B_scaffold_71_212
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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205462..206901
DNA (1440bp) protein (480aa)
Uncharacterized amino acid permease yhdG n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CSZ9_STEMA
Amino acid permease {ECO:0000313|EMBL:KHL55375.1}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. cannabis.;"
amino acid/polyamine/organocation transporter, APC superfamily
SCN18_25_8_15_R4_B_scaffold_71_213
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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206913..207875
DNA (963bp) protein (321aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
miaA; tRNA isopentenyltransferase (EC:2.5.1.75)
tRNA delta(2)-isopentenylpyrophosphate transferase n=1 Tax=Xanthomonas sacchari RepID=UPI000262A5C4
SCN18_25_8_15_R4_B_scaffold_71_214
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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208018..208293
DNA (276bp) protein (92aa)
RNA-binding protein Hfq n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UR18_PSEUP
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hfq; RNA-binding protein Hfq
SCN18_25_8_15_R4_B_scaffold_71_215
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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208343..209671
DNA (1329bp) protein (443aa)
GTPase HflX n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F91381
GTP-binding proten HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCN18_25_8_15_R4_B_scaffold_71_216
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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209668..210783
DNA (1116bp) protein (372aa)
Putative integral membrane protease subunit HflK n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZDX2_XANCT
Membrane protein {ECO:0000313|EMBL:KGM55399.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
HflK protein
SCN18_25_8_15_R4_B_scaffold_71_217
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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210780..211643
DNA (864bp) protein (288aa)
membane protease HflC n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000305F705
HflC protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_71_218
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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211647..211838
DNA (192bp) protein (64aa)
Putative transmembrane protein n=3 Tax=Stenotrophomonas maltophilia RepID=B2FQG2_STRMK
NODE_24, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ98151.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
transmembrane protein
SCN18_25_8_15_R4_B_scaffold_71_219
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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211929..215690
DNA (3762bp) protein (1254aa)
RecBCD enzyme subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01486};; Exonuclease V subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; Helicase/nuclease RecBCD subunit RecC {ECO:0000256|HAMAP-Rule:MF_01486}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
DNA helicase/exodeoxyribonuclease V, gamma subunit (EC:3.1.11.5)
Exodeoxyribonuclease V subunit gamma n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7B2_9GAMM
SCN18_25_8_15_R4_B_scaffold_71_220
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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215687..219346
DNA (3660bp) protein (1220aa)
RecBCD enzyme subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01485};; Exonuclease V subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; Helicase/nuclease RecBCD subunit RecB {ECO:0000256|HAMAP-Rule:MF_01485}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
Exodeoxyribonuclease V subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7B1_9GAMM
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
SCN18_25_8_15_R4_B_scaffold_71_221
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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219343..221223
DNA (1881bp) protein (627aa)
RecBCD enzyme subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; EC=3.1.11.5 {ECO:0000256|HAMAP-Rule:MF_01487};; Exonuclease V subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; Helicase/nuclease RecBCD subunit RecD {ECO:0000256|HAMAP-Rule:MF_01487}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
DNA helicase/exodeoxyribonuclease V, alpha subunit (EC:3.1.11.5)
Exodeoxyribonuclease V subunit alpha n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W7B0_9GAMM
SCN18_25_8_15_R4_B_scaffold_71_222
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(221356..221658)
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q99IW7_9BACT
antibiotic biosynthesis monooxygenase
Putative uncharacterized protein {ECO:0000313|EMBL:AAK28573.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCN18_25_8_15_R4_B_scaffold_71_223
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(221831..222253)
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPA4_PSEUU
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV26077.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCN18_25_8_15_R4_B_scaffold_71_224
unknown

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comp(222407..223045)
DNA (639bp) protein (213aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_71_225

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comp(223636..223935)
DNA (300bp) protein (100aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BJI0_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48938.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCN18_25_8_15_R4_B_scaffold_71_226
unknown

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comp(224006..224674)
DNA (669bp) protein (223aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_71_227
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(225050..225649)
DNA (600bp) protein (200aa)
Phosphoserine phosphatase n=14 Tax=Enterobacteriaceae RepID=Q75WM5_ECOLX
hydrolase
Putative phosphoserine phosphatase {ECO:0000313|EMBL:ACR19023.1}; TaxID=573 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae.;"
SCN18_25_8_15_R4_B_scaffold_71_228
unknown

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comp(225724..226128)
DNA (405bp) protein (135aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_71_229
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(226190..226519)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI00037459E1
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCN18_25_8_15_R4_B_scaffold_71_230
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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comp(226838..227326)
DNA (489bp) protein (163aa)
Putative uncharacterized protein id=4142271 bin=GWF2_Lentisphaerae_50_93 species=Burkholderia pseudomallei genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
SCN18_25_8_15_R4_B_scaffold_71_231
unknown

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comp(228178..229002)
DNA (825bp) protein (275aa)

This feature has no annotations

SCN18_25_8_15_R4_B_scaffold_71_232
unknown

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comp(229032..229826)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Calothrix sp. PCC 7103 RepID=UPI0002DF71E3
SCN18_25_8_15_R4_B_scaffold_71_233
unknown

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comp(229931..230338)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Xanthomonas campestris RepID=UPI00036B0374
SCN18_25_8_15_R4_B_scaffold_71_234
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(231017..231766)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI00037B5385
Uncharacterized protein {ECO:0000313|EMBL:CCP10079.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
hypothetical protein
SCN18_25_8_15_R4_B_scaffold_71_235
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(232217..232642)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BE75_9XANT
Uncharacterized protein {ECO:0000313|EMBL:EGD09225.1}; TaxID=925775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria ATCC 35937.;"
hypothetical protein
Displaying items 211-240 of 469 in total

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