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SCN18_30_10_14_R2_B_scaffold_2068_6

Organism: SCN18_30_10_14_R2_B_Bacteria_71_11

near complete RP 46 / 55 MC: 7 BSCG 45 / 51 MC: 4 ASCG 12 / 38 MC: 1
Location: comp(3219..4838)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54 factor interaction domain-containing protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SQM8_PLAL2 similarity UNIREF
DB: UNIREF100
  • Identity: 60.4
  • Coverage: 533.0
  • Bit_score: 629
  • Evalue 3.00e-177
sigma-54 factor interaction domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 60.4
  • Coverage: 533.0
  • Bit_score: 629
  • Evalue 8.50e-178
Sigma-54 factor interaction domain-containing protein {ECO:0000313|EMBL:ADG68490.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.4
  • Coverage: 533.0
  • Bit_score: 629
  • Evalue 4.20e-177

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Taxonomy

Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1620
ATGTCTCGGGACGCGATAGCGGTCTTCACCGACCCCAAACAGCTCTTGCTCGACATGGCCGAGCAGCGCGCGGTCGACGCCCTCCTCAGTCTGGTCGTCACCCGCCTCGCCGACTCCCCCAGGGTTGCCCTCTCACGGGTGTGGCTCATCCTTCCGCCCGGGGCGTGCGAGGTCTGTCGGGACGGTGGCCGGGACTCGGGCATCGAGCCCGCGTTACACCTGGCGGCGAGCGCCGGCCGGTCCGTGGCCGATCCGAACGAGGCGTGGGACCGGGTGGACGGGGCGTTCCACCGGTTCGCCCCGGGCGAGCGGAAGGTCGGCCAGATCGGCCGGTCCGGGCAGCCGCTCGAGATCCCGGACGTTGACCCGTTCTCCCCCTGGGTAGCCGACTCCGACTGGGTCCGCCGCGAGGGCATCACCGGGTTCGGCGGCCAGCCACTCGTTCACCAGGGACGCGTCCTCGGGGTGCTGGCGGTGTTCACCCGTGCCCCGCTCGACGAGGGGTCGCTCGGGTGGCTCCGGATGGTCGCCAACCACGCCGCGGCGGCCATCGCCACCGCCCGCGCGTTCGAGGAGGTGGAGGGGCTCCGGCGGCGGCTCGAGCTGGAGGCCGAGTACCTCCGCGGGGAGGTCCGGGCGGCCCACGCCTATGGCCGGTTCGTCGGCCGAAGCCCGGCGCTCGACGCCGTCCTCCGGCAGATCGACCTCGTCGCCCCGACCGACGCCGCGGTCCTGGTCACCGGGGAAAGCGGGACGGGCAAGGAGCTCGTCGCCCGGGAGATCCACGCCCGCAGCCGTCGGGCCGCCCGGCCGCTCATCAAGGTGAACTGCGCGGCCGTCCCCCGCGACCTTTACGAGAGCGAGTTCTTCGGCCACGCGAGGGGGGCGTTCACCGGGGCGGCGCGGGACCGGGTCGGGCGGTTCGAGTTGGCCGACGGGGGCACCCTGTTCCTGGACGAGGTGGGGGAGATCCCGCCCGACCTCCAGCCGAAGCTCCTGCGGGTGCTCCAGGAGGGAGAGTTCGAACGGGTGGGCGAGGAGCGGACCCGGACCGCGGACGTGCGGGTAATAGCGGCCACCAACCGCGACCTCAAGCGGGAGGTCGCGGCCGGGCGGTTCCGGGAGGACCTGTACTTCCGGCTGAACGTGTTCCCGATCGAGGTTCTGCCCCTCCGCCGGCGGGCCGAGGACGTCGCCCCGCTGGCAGAGCACTTCCTGGCCGGAGCGGCGGAGCGGCTCGGCCGTCCGGTCCCGCGGCTCACCCAGGCGGACGCCGACCGGCTCCGCCGGTACCCCTGGCCGGGAAACGTCCGGGAGCTCCAGCACCTGATCGAGCGGGCGGTGATCGTGTCGACCGGGCGGCGCCTCGTCCTCGACCTGCCGGAGGCTCCGCCACCGGCGGCCCCAACGCCGCCGGTCCAGTTACTCGCCGGCGCCCCGGACCGGGTGCTGACCGAGGCCGAATTTCGGGAGCTCGAGCGGCAGAACGTCCGGGCGGCACTCCGGCGGGCCGGGGGGAAAATCTACGGGTCGGGCGGGGCCGCCGAACTGCTCGGCCTCAAACCGACGACGCTCGCGTCTCGCATGAAGGCGCTGGGCGTCCGGGCTGACGAGGGGTAA
PROTEIN sequence
Length: 540
MSRDAIAVFTDPKQLLLDMAEQRAVDALLSLVVTRLADSPRVALSRVWLILPPGACEVCRDGGRDSGIEPALHLAASAGRSVADPNEAWDRVDGAFHRFAPGERKVGQIGRSGQPLEIPDVDPFSPWVADSDWVRREGITGFGGQPLVHQGRVLGVLAVFTRAPLDEGSLGWLRMVANHAAAAIATARAFEEVEGLRRRLELEAEYLRGEVRAAHAYGRFVGRSPALDAVLRQIDLVAPTDAAVLVTGESGTGKELVAREIHARSRRAARPLIKVNCAAVPRDLYESEFFGHARGAFTGAARDRVGRFELADGGTLFLDEVGEIPPDLQPKLLRVLQEGEFERVGEERTRTADVRVIAATNRDLKREVAAGRFREDLYFRLNVFPIEVLPLRRRAEDVAPLAEHFLAGAAERLGRPVPRLTQADADRLRRYPWPGNVRELQHLIERAVIVSTGRRLVLDLPEAPPPAAPTPPVQLLAGAPDRVLTEAEFRELERQNVRAALRRAGGKIYGSGGAAELLGLKPTTLASRMKALGVRADEG*