ggKbase home page

SCN18_30_10_14_R2_B_scaffold_13726_1

Organism: SCN18_30_10_14_R2_B_Rhizobiales_63_8

near complete RP 44 / 55 MC: 5 BSCG 48 / 51 MC: 8 ASCG 11 / 38 MC: 3
Location: comp(1..450)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia felis ATCC 53690 RepID=K8NR01_AFIFE similarity UNIREF
DB: UNIREF100
  • Identity: 81.7
  • Coverage: 126.0
  • Bit_score: 212
  • Evalue 2.40e-52
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS29910.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.7
  • Coverage: 126.0
  • Bit_score: 212
  • Evalue 3.40e-52
RNA polymerase sigma factor RpoE similarity KEGG
DB: KEGG
  • Identity: 57.4
  • Coverage: 122.0
  • Bit_score: 141
  • Evalue 2.00e-31

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 → SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 450
ATGGATGCTGCAAGTTCACATCTCGGCAACAGGCATCGGCGGCAGGTCCGCCCGGCAGCGAGACTCATTGTTTTGAACGAAGCCAGGCAAAAAGAGGTAGCGCCGTCTCCTGAGGACCTGATCGAGCTTCTAAGCGCAGTTGCTCGCGCGCAGGACCGGAATGCGTTTGCGCGGCTGTTCGGCTATTTCGCGCCACGCGTGAAGAGCTTCCTGATCCGGTCCGGTCTCGAGGATGGCGTGGCCGAGGAAGTGACGCAGGAAGTCATGATCCTGGTATGGCGCAAGGCGTCCTACTTCGATCCGGGCCGCGCTGGCGCCTCGACATGGGTATTCACGATCGCTCGCAACCAAAGGATCGACCGCCTGCGCCGAACGCGCTCCCGGACAGCAGATCGCCAGTTCGATCCCAGCGAAGAACCCGATCAGCCCCCATCGGGCGAGGACATCGCG
PROTEIN sequence
Length: 150
MDAASSHLGNRHRRQVRPAARLIVLNEARQKEVAPSPEDLIELLSAVARAQDRNAFARLFGYFAPRVKSFLIRSGLEDGVAEEVTQEVMILVWRKASYFDPGRAGASTWVFTIARNQRIDRLRRTRSRTADRQFDPSEEPDQPPSGEDIA