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SCN18_30_10_14_R2_B_Rhizobiales_63_8

In projects: SCN18_30_10_14_R2_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

Extracted from SCN18_30_10_14_R2_B_concoct_131

Displaying items 1-50 of 1283 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_30_10_14_R2_B_scaffold_54993
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
1 1084 bp 62.73 5.40 95.20
SCN18_30_10_14_R2_B_scaffold_54912
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
1 1085 bp 66.27 7.47 99.82
SCN18_30_10_14_R2_B_scaffold_54524
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
2 1752 bp 66.50 4.45 97.60
SCN18_30_10_14_R2_B_scaffold_54521
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (66.67%)
3 1092 bp 65.84 8.10 100.28
SCN18_30_10_14_R2_B_scaffold_54498
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
1 1092 bp 63.46 8.24 95.33
SCN18_30_10_14_R2_B_scaffold_54453
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
1 1093 bp 62.95 10.16 89.48
SCN18_30_10_14_R2_B_scaffold_54331
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)
2 1095 bp 65.48 6.71 99.18
SCN18_30_10_14_R2_B_scaffold_54098
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
2 1783 bp 60.74 8.75 100.11
SCN18_30_10_14_R2_B_scaffold_59992
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)
2 1010 bp 63.96 5.50 87.33
SCN18_30_10_14_R2_B_scaffold_59991
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
1 1661 bp 63.82 5.24 99.88
SCN18_30_10_14_R2_B_scaffold_59849
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
2 1012 bp 66.90 6.23 99.90
SCN18_30_10_14_R2_B_scaffold_59834
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)
2 1012 bp 64.43 5.19 92.19
SCN18_30_10_14_R2_B_scaffold_59615
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
2 1016 bp 65.06 6.64 100.10
SCN18_30_10_14_R2_B_scaffold_59376
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
2 1019 bp 65.55 7.65 100.10
SCN18_30_10_14_R2_B_scaffold_59127
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
2 1022 bp 62.33 8.07 73.39
SCN18_30_10_14_R2_B_scaffold_90288
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (66.67%)
3 1210 bp 59.83 3.72 82.31
SCN18_30_10_14_R2_B_scaffold_89016
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (66.67%)
3 1165 bp 64.21 6.70 100.17
SCN18_30_10_14_R2_B_scaffold_57991
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)
2 1038 bp 62.52 8.24 100.29
SCN18_30_10_14_R2_B_scaffold_57625
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
3 1443 bp 65.21 6.03 89.61
SCN18_30_10_14_R2_B_scaffold_57598
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
3 1044 bp 63.79 6.61 101.44
SCN18_30_10_14_R2_B_scaffold_57493
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
1 1045 bp 64.88 9.04 99.90
SCN18_30_10_14_R2_B_scaffold_57453
Species: SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14 (100%)
1 1046 bp 56.12 6.17 41.59
SCN18_30_10_14_R2_B_scaffold_57360
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
2 1048 bp 60.21 7.30 95.61
SCN18_30_10_14_R2_B_scaffold_57346
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
2 1048 bp 58.87 4.58 94.18
SCN18_30_10_14_R2_B_scaffold_57330
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
2 1048 bp 63.55 4.72 63.55
SCN18_30_10_14_R2_B_scaffold_57162
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
2 1051 bp 65.37 6.28 100.19
SCN18_30_10_14_R2_B_scaffold_57044
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (50%)
2 1053 bp 65.81 10.11 99.43
SCN18_30_10_14_R2_B_scaffold_57038
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
3 1053 bp 61.63 6.55 86.32
SCN18_30_10_14_R2_B_scaffold_83888
Species: SCNPILOT_CONT_300_BF_Rhizobiales_62_47 (100%)
1 1482 bp 58.84 7.29 53.24
SCN18_30_10_14_R2_B_scaffold_83284
Species: SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39 (100%)
4 1574 bp 59.09 6.58 74.14
SCN18_30_10_14_R2_B_scaffold_81690
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
2 1365 bp 62.71 6.37 51.65
SCN18_30_10_14_R2_B_scaffold_79915
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
1 1375 bp 62.04 6.87 99.93
SCN18_30_10_14_R2_B_scaffold_77856
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
1 1371 bp 61.34 8.10 100.00
SCN18_30_10_14_R2_B_scaffold_75583
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (50%)
2 1700 bp 62.12 6.26 67.76
SCN18_30_10_14_R2_B_scaffold_70948
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
3 1474 bp 63.03 7.12 87.31
SCN18_30_10_14_R2_B_scaffold_70214
Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)
2 1311 bp 66.59 5.15 52.86
SCN18_30_10_14_R2_B_scaffold_68866
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
1 1595 bp 59.37 8.75 95.36
SCN18_30_10_14_R2_B_scaffold_67250
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
1 1553 bp 65.36 7.05 99.87
SCN18_30_10_14_R2_B_scaffold_67190
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
3 1310 bp 61.76 6.64 73.28
SCN18_30_10_14_R2_B_scaffold_64577
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (66.67%)
3 2318 bp 64.80 8.28 97.07
SCN18_30_10_14_R2_B_scaffold_64482
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)
4 1772 bp 65.01 8.21 86.17
SCN18_30_10_14_R2_B_scaffold_64368
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
3 1933 bp 62.34 5.90 74.50
SCN18_30_10_14_R2_B_scaffold_63897
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
3 2190 bp 65.48 6.99 90.68
SCN18_30_10_14_R2_B_scaffold_43908
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (100%)
2 1298 bp 59.86 6.47 78.35
SCN18_30_10_14_R2_B_scaffold_43860
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
2 1299 bp 63.28 8.55 96.77
SCN18_30_10_14_R2_B_scaffold_43816
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
3 1300 bp 64.15 6.81 101.77
SCN18_30_10_14_R2_B_scaffold_43399
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
1 1310 bp 65.11 11.79 99.85
SCN18_30_10_14_R2_B_scaffold_43387
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (50%)
2 1310 bp 62.29 5.50 72.82
SCN18_30_10_14_R2_B_scaffold_43219
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17 (100%)
2 1314 bp 64.61 6.85 92.69
SCN18_30_10_14_R2_B_scaffold_43189
Species: SCNPILOT_CONT_750_P_Mesorhizobium_63_10 (100%)
2 1314 bp 63.62 8.11 86.76
Displaying items 1-50 of 1283 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.