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scnpilot_p_inoc_scaffold_2384_21

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(12069..12581)

Top 3 Functional Annotations

Value Algorithm Source
Putative stress response/stationary phase sigma factor SigF n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UZ99_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 31.2
  • Coverage: 176.0
  • Bit_score: 83
  • Evalue 2.50e-13
Putative stress response/stationary phase sigma factor SigF {ECO:0000313|EMBL:EGD41590.1}; TaxID=408672 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidace similarity UNIPROT
DB: UniProtKB
  • Identity: 31.2
  • Coverage: 176.0
  • Bit_score: 83
  • Evalue 3.60e-13
RNA polymerase sigma-28 subunit similarity KEGG
DB: KEGG
  • Identity: 59.4
  • Coverage: 69.0
  • Bit_score: 77
  • Evalue 3.90e-12

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Taxonomy

Nocardioidaceae bacterium Broad-1 → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 513
GTGGAACCGATCGCAAGCGAACTCCACCCGCTGATCGAGGAGAACGTCGGCCTGGCCTGGTCCGTCGCGCTTCGCTGGCGGCGCTCCGGCCTCGACGTCGAGGACCTCGCCCAAGTCGGGATGCTCGGCTTGATGAAGGCGGCCCGCGCCTTCGACCCCGAGCGCGGCCAGTTCAGCACCTTCGCGACCTGGTGGATTCGATCGGCGATCGGCCGGGCGGCCGAGAAGGCGTTGCGGCACGGCGGCCTGGTCAGCCTCGACGCGCTCGACCGTGAGGCCGTGGACGACGCCGACGGACCCGCCGACGACATGATCGCCGTAGAGACGGCGGCGGCCGTCTGGGGGGCCGTGGACGCGCTTCCTGAGAAGGACCGCGAAGTCATCCGGGCTCGATTCGAGGAAGGGGTGAGCCAATCGCGGATCGGCGAACGGCTGGGGGTCACCAGGACCCGCGCCTACCAACGTGAGAAGCGGGCCGTCGAGAGGCTCCGGGAGATGCTCGCGGTGGGGTGA
PROTEIN sequence
Length: 171
VEPIASELHPLIEENVGLAWSVALRWRRSGLDVEDLAQVGMLGLMKAARAFDPERGQFSTFATWWIRSAIGRAAEKALRHGGLVSLDALDREAVDDADGPADDMIAVETAAAVWGAVDALPEKDREVIRARFEEGVSQSRIGERLGVTRTRAYQREKRAVERLREMLAVG*