ggKbase home page

scnpilot_p_inoc_scaffold_12829_5

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(1976..2404)

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAH5_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 60.7
  • Coverage: 145.0
  • Bit_score: 161
  • Evalue 6.20e-37
helix-turn-helix domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 60.7
  • Coverage: 145.0
  • Bit_score: 161
  • Evalue 1.70e-37
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEV98137.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella kor similarity UNIPROT
DB: UniProtKB
  • Identity: 60.7
  • Coverage: 145.0
  • Bit_score: 161
  • Evalue 8.60e-37

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 429
ATGCCTGAAAAAGTACATCATGGAAGGGCCGTAAAACGCATTCGGGAAATATTGCATATAAAGCAGGAGGTTTTGGCCGATGCATTAGGTATCAGCCAACAAAGTGTTTCTGTGTTAGAAAGCAAAGAAACTATTGAGCCGGAGCAACTGGAACAAATTGCCCAAACCCTGAAAGTGCCTGTTGAGGCGATCAAGAACTTTAATGAGGAAGGGACAATTTTCTATATACAGCATAACCATGAGGGGGCTAATTCCAGTACTGGTGCAATTATTTCTGGCGGAGAAAATTATAACCATTGCAATTTTAACCCACTTGATAAGTATGTTGAAGCAGTTGAGGAAATAAAGAAATTGTATGATGCTTTAGTGAAAGAAAAAGACGAAAAGATTGTGTTGTTGGAAAAGATGTTGGGAGAAAAAAAGAAGTAA
PROTEIN sequence
Length: 143
MPEKVHHGRAVKRIREILHIKQEVLADALGISQQSVSVLESKETIEPEQLEQIAQTLKVPVEAIKNFNEEGTIFYIQHNHEGANSSTGAIISGGENYNHCNFNPLDKYVEAVEEIKKLYDALVKEKDEKIVLLEKMLGEKKK*