ggKbase home page

scnpilot_p_inoc_scaffold_16617_5

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(2172..2864)

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, LytTR family n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EGK4_RUNSL similarity UNIREF
DB: UNIREF100
  • Identity: 58.4
  • Coverage: 231.0
  • Bit_score: 278
  • Evalue 7.30e-72
LytTR family two component transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 60.6
  • Coverage: 231.0
  • Bit_score: 291
  • Evalue 1.20e-75
LytTR family two component transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 58.4
  • Coverage: 231.0
  • Bit_score: 278
  • Evalue 2.10e-72

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 693
ATGATACAGGCTGTTGCGATAGATGATGAATTACCCGCGCTGAGTATAATTCAGAATTTTTGCGCGAGAACGGGTTTTATTGACCTGCAGAAAACTTTTTATCAGCCCGGGGAAGCATTGAAGCATCTCAGGAAATTTCCCGTTGACCTGCTCTTCCTTGATATTAATATGCCTTCGCTGAACGGCATTGATCTGTATAAATCCGTTTCACAGGACACAATGGTAATATTTACCACCGCCTATAGCGAGTATGCAGTGGAAGGCTTTAACCTGAGCGCTGTGGATTACCTGCTAAAACCTTTTACCTACAGGCGTTTTTTACAGGCGGCGGAAAAAGCCAGGGACTATAATGCTTACCGGTTGCAGAAGGACAATACAGCCGCCCAATACCTTTTTGTAAGAGCCGACTACAGCCTTGTTAAAATTGAGACTGATACTATACGCTACATAGAAGGACGGGACGATTATGTAAAAATATACTTCGAACATCAAAAGCCCCTGGTTACCAGGATGACCATAAAAAATATGCTGGAAAAGCTTCCTGCCAACCAGTTTGTCCGTATTCACCGATCTTATATTGTTGCGCTCCGCAGCATTGAAAGCGTAAGAAATAAGATTGTTACCATTGGAGATGCAAGACTTCCTGTTGGGAACAGCTTCGAAGAAAATTTCTTAAAGCATTTTAACAAATAA
PROTEIN sequence
Length: 231
MIQAVAIDDELPALSIIQNFCARTGFIDLQKTFYQPGEALKHLRKFPVDLLFLDINMPSLNGIDLYKSVSQDTMVIFTTAYSEYAVEGFNLSAVDYLLKPFTYRRFLQAAEKARDYNAYRLQKDNTAAQYLFVRADYSLVKIETDTIRYIEGRDDYVKIYFEHQKPLVTRMTIKNMLEKLPANQFVRIHRSYIVALRSIESVRNKIVTIGDARLPVGNSFEENFLKHFNK*