ggKbase home page

scnpilot_p_inoc_scaffold_16956_1

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(3..152)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0D5_LEPCP similarity UNIREF
DB: UNIREF100
  • Identity: 73.9
  • Coverage: 46.0
  • Bit_score: 75
  • Evalue 2.00e-11
RNA polymerase sigma-70 factor, ECF subfamily protein {ECO:0000313|EMBL:KFE72203.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacterace similarity UNIPROT
DB: UniProtKB
  • Identity: 76.0
  • Coverage: 50.0
  • Bit_score: 78
  • Evalue 3.40e-12
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 76.1
  • Coverage: 46.0
  • Bit_score: 75
  • Evalue 5.70e-12

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hyalangium minutum → Hyalangium → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 150
ATGACCCAGATCGAAACCCATCGCGCTGTCGAGGCCGTGTGGCGCATCGAGGCCGCAAGGCTCATCGGCAGCCTCACGAAGCTGACGCGCGACGTGGGGCAGGCGGAGGAGCTTGCCCAGGATGCGCTGGTCGCGGCCCTGCGCGACTGG
PROTEIN sequence
Length: 50
MTQIETHRAVEAVWRIEAARLIGSLTKLTRDVGQAEELAQDALVAALRDW