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scnpilot_p_inoc_scaffold_20201_7

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(2021..2800)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGS2_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 97.3
  • Coverage: 259.0
  • Bit_score: 493
  • Evalue 9.50e-137
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hypho similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 259.0
  • Bit_score: 495
  • Evalue 4.60e-137
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 97.3
  • Coverage: 259.0
  • Bit_score: 493
  • Evalue 2.70e-137

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Taxonomy

Devosia sp. 17-2-E-8 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 780
ATCCAGGAATTCCGCAAGATCGTCAACCAGGTGCAGAAGGGCGAACGCGAGGCGGCCATCGCCAAGAAGGAGATGGTGGAGGCCAATCTGCGCCTCGTCATCTCCATCGCCAAGAAGTACACCAACCGCGGCCTGCAATTCCTCGACCTGATCCAGGAAGGCAATATCGGCCTGATGAAGGCGGTGGACAAGTTCGAGTACCGGCGCGGCTACAAGTTCTCGACCTACGCGACGTGGTGGATCCGGCAGGCGATCACCCGCTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGATCGTCCGCACGTCGCGCCAGATGCTGCACGAGATCGGCCGCGAGCCGACGCCCGAGGAGCTGAGCGAAAAGCTGCAGATGCCCCTCGACAAGGTGCGCAAGGTGCTGAAGATCGCCAAGGAGCCGATCAGCCTCGAAACGCCGATCGGCGACGAGGAGGATTCCAACCTCGGCGATTTCATCCCCGACGTGAACGCGGTGCAGCCGATCGACGCGGCGATCCAGAGCAATCTGCGCGAGACCACGACGCGTGTGCTGGCGTCGCTGACGCCGCGCGAGGAGCGCGTGCTGCGCATGCGCTTCGGCATCGGCATGAACACCGACCACACGCTCGAGGAAGTGGGTCAGCAGTTCTCGGTGACGCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTCAAGCACCCGAGCCGCTCACGCAAGCTGAGGAGCTTCCTCGACAATTGA
PROTEIN sequence
Length: 260
IQEFRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIPDVNAVQPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN*