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scnpilot_p_inoc_scaffold_20272_4

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(2132..2335)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERK1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.1
  • Coverage: 67.0
  • Bit_score: 127
  • Evalue 6.10e-27
Cold shock protein {ECO:0000313|EMBL:EYR84585.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.5
  • Coverage: 67.0
  • Bit_score: 134
  • Evalue 4.10e-29
putative cold-shock DNA-binding domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 66.0
  • Bit_score: 119
  • Evalue 3.60e-25

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 204
ATGGCAACCGGTATCGTTAAGTTTTTCAATCAAGACAAGGGCTTCGGCTTCATCACCCCGGATAATGGCGGAGCAGACGTCTTTGTCCATATATCGGCTGTCCAGGCCGGAGGACCGCTCAGGGACGGTGCGAAGGTCAGCTACGACATCGGCCAGGATCGAAAGACCGGCAAGTCGAAGGCCGAAAACGTTCAGACGATCTGA
PROTEIN sequence
Length: 68
MATGIVKFFNQDKGFGFITPDNGGADVFVHISAVQAGGPLRDGAKVSYDIGQDRKTGKSKAENVQTI*