ggKbase home page

scnpilot_p_inoc_scaffold_18491_2

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(170..730)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T0M7_JANMA similarity UNIREF
DB: UNIREF100
  • Identity: 76.4
  • Coverage: 182.0
  • Bit_score: 291
  • Evalue 6.70e-76
fecI12; ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 76.4
  • Coverage: 182.0
  • Bit_score: 291
  • Evalue 1.90e-76
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:ABR89301.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.4
  • Coverage: 182.0
  • Bit_score: 291
  • Evalue 9.40e-76

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Janthinobacterium sp. Marseille → Janthinobacterium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 561
ATGCCGGACTCGATCAAGGCCGCGCTGCGCGCGCTGTTCCTCGCGCGCTACGCCCAGTTCAGGAAGCATCTGCAGATTCGGCTCGGCTCCGAAGATTTGGCCAATGACGCGCTGCAGGAGGCTTATCTGCGCGTGGAAAACACCATCGTGCGCAGCGCGGTGCGCTACCCGTCGGCCTACCTGTTCCGCATCGCGCTCAACGTGGCGGAAGACCAGCGCAAGAGCAACTCGCGCCTGCTGAGCGTGGGCGAGGTCGAGGAGCTCTACGACATGGCCGACGAAATGGCCGACCCCGCGCGCGGCGCCGAGGCCCGCAACGAGCTGGAGGCGCTGGAGCGCGCACTGGCCGAGCTGCCGCGCCGCCGCCGCGCCATCGTGCTGGCGGCGCGCGTGGACGAGATGCCGCACAAGGACATCGCCGCGCGCTACGGCGTGTCGGCGCGCACCGTCGAAAAAGAATTGCGCGCCGGCCTGGAGCACTGCTGCGAGCGACTGGGGCGTGATTTCATCCAGCGCTTCGGTCCCGGCGCGGGAAAACAGTCTAAGCGTGATGGCAGCTGA
PROTEIN sequence
Length: 187
MPDSIKAALRALFLARYAQFRKHLQIRLGSEDLANDALQEAYLRVENTIVRSAVRYPSAYLFRIALNVAEDQRKSNSRLLSVGEVEELYDMADEMADPARGAEARNELEALERALAELPRRRRAIVLAARVDEMPHKDIAARYGVSARTVEKELRAGLEHCCERLGRDFIQRFGPGAGKQSKRDGS*