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scnpilot_p_inoc_scaffold_20352_7

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: 2260..2781

Top 3 Functional Annotations

Value Algorithm Source
Type III secretion outer membrane pore, YscC/HrcC family n=25 Tax=Bordetella RepID=V8U209_BORPT similarity UNIREF
DB: UNIREF100
  • Identity: 37.7
  • Coverage: 167.0
  • Bit_score: 118
  • Evalue 5.60e-24
type III secretion protein similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 144.0
  • Bit_score: 129
  • Evalue 1.20e-27
Type III secretion outer membrane pore, YscC/HrcC family {ECO:0000313|EMBL:KDD59475.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella similarity UNIPROT
DB: UniProtKB
  • Identity: 37.7
  • Coverage: 167.0
  • Bit_score: 118
  • Evalue 7.80e-24

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Taxonomy

Bordetella bronchiseptica → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 522
ATGAAGACACCGTCCGCGCACCGCTGGCTGGGGCCTGTGCTGTTCTGGGCCCTGGCGGGCGCCCTGTGCCTGGGCTGGACAGGCGCGCGCGCCGCAGAGGCCGCGGGCGCCGCCGCGCCGTGGCCGCAGAGCCCCTACAGCTACATCAACCGCAACCAGACCCTGGAGCAGGTGCTGCGGGATTTCGCCACCACCTTCGGCCTGCAGCTGCGCATCGAGGACGACCTGTCGGCCGAGCCGCTGCCCGCGAGCGGGCGCAGCCAGTCGGCCAACCCCGGCGAATTCCTCAACCAGCTCAGCGCGGCGCACGGCCTGCTCTGGTACCAGCACGCGGGGGTGCTCCACATCAGCCGCATGAGCGCGCAGGCCACGCAGAGCTTCTCCACGCGCGGACTGCCACCCGACTCGCTCAAGCGCGTCGTGGCCGAACTCGGCCTGCTCGACGAGCGCTTCGGCTGGAGCGGCGTGCCCGAGCGCAACCTGGTGTTCGTGTCGGGGCCGGCGTCCTACGTCGAGCGCATC
PROTEIN sequence
Length: 174
MKTPSAHRWLGPVLFWALAGALCLGWTGARAAEAAGAAAPWPQSPYSYINRNQTLEQVLRDFATTFGLQLRIEDDLSAEPLPASGRSQSANPGEFLNQLSAAHGLLWYQHAGVLHISRMSAQATQSFSTRGLPPDSLKRVVAELGLLDERFGWSGVPERNLVFVSGPASYVERI