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scnpilot_p_inoc_scaffold_26917_4

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(1141..1692)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y5D8_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 40.0
  • Coverage: 185.0
  • Bit_score: 159
  • Evalue 3.00e-36
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EHQ28949.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacte similarity UNIPROT
DB: UniProtKB
  • Identity: 40.5
  • Coverage: 185.0
  • Bit_score: 160
  • Evalue 2.50e-36
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 44.8
  • Coverage: 181.0
  • Bit_score: 159
  • Evalue 8.50e-37

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Taxonomy

Mucilaginibacter paludis → Mucilaginibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 552
TTGCTTTCGCAGGTACGTGAAGGAGATGTAAAGGCATTTGAACGTATTTACAGAAGCTATAGCCCAAGGCTGTACGGCAGCATATTCAGGATCGTGAAATCTGTTCCGGTTACAGAAGAGCTGTTGCAGGATGTTTTCCAGCGGGTATGGGAGCATCGTAAAACCATTGATGTCAACCTTTCCTTCAAATCCTATTTGTTTACCATTGCCAGGAACCTGGTATATGATTATTTTAATAAAGCTTCCCGTCAAAAATTAATGGAGCGCTATCTCCAGGCAAAAGAAATGAGCAGCAGCGATGTCTTTCGCAATCAATTGGAGGAAAAGGAATCCGAACAACTGCTGGAGAAAGCCATACATCAGTTACCTCCGCAGCGCAGGCTGGTATATACCCTGTGTAAAATAGAAGGAAGGAGTTATGATGAGGTAAGCAGGACACTGGGCATATCCGTTTCTACCATCAGCGATCACATGGTAAAGGCAGCTAAGTCTATAAAAGCATATTATTTGTCGAGAGCGCTTTTATATTTTATTTTTCTTGCCTGTCTTTAA
PROTEIN sequence
Length: 184
LLSQVREGDVKAFERIYRSYSPRLYGSIFRIVKSVPVTEELLQDVFQRVWEHRKTIDVNLSFKSYLFTIARNLVYDYFNKASRQKLMERYLQAKEMSSSDVFRNQLEEKESEQLLEKAIHQLPPQRRLVYTLCKIEGRSYDEVSRTLGISVSTISDHMVKAAKSIKAYYLSRALLYFIFLACL*