ggKbase home page

scnpilot_p_inoc_scaffold_29234_3

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(1562..2104)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, TetR family n=1 Tax=Variovorax paradoxus RepID=K0PRN0_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 93.9
  • Coverage: 180.0
  • Bit_score: 340
  • Evalue 1.20e-90
  • rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CCM73847.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor similarity UNIPROT
DB: UniProtKB
  • Identity: 93.9
  • Coverage: 180.0
  • Bit_score: 340
  • Evalue 1.70e-90
TetR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 88.2
  • Coverage: 178.0
  • Bit_score: 314
  • Evalue 2.00e-83

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 543
CGCGAAGCCCTGCTGGCCGAGGTGGCGGCCGCTGTCATGGCCGATGTCGCGCCTCCACCGGGCAAGCTCGAATGGCAGGCCTGGATCGTCGAGCTGTTCCGCCGCTGTCGTGAGGCCGTGCGGCGCCACCCGAACGTGGCGCAACTGCTGGGCGCGCAGCTGGTGTCCAACGGCAGCCTGCCGACGGAGCTGGTCGAAGGGGTGCTGGCCGCTTTGGCCGAGGCCGGCTTCGAGGGCGAGGCGCTGCTGGAGGCCTACAACTGCGTGATCGCGGCGATGCTGGGCTTCCTGACGATGGAGTTCTCGCCCCTGCCCGCCGACAACACCCAGGCCTGGGCCGAGGAGCTGCGCGAGCGCGTGCACACGATCCGCCCGCTCGACCATCCGGTGCTCACGCGCAACTTGCCGCTGCTGGCCAACAGGGCCTTCATCGTGAGATGGGACAACGGCACCACGGTGCCGCTGGACAGCAGCTTCGAGCGCCACATACAAATGACCATCGACGGGCTCGAGGCCTTCGCGCGCAGGGTCAGGCCGGCATAG
PROTEIN sequence
Length: 181
REALLAEVAAAVMADVAPPPGKLEWQAWIVELFRRCREAVRRHPNVAQLLGAQLVSNGSLPTELVEGVLAALAEAGFEGEALLEAYNCVIAAMLGFLTMEFSPLPADNTQAWAEELRERVHTIRPLDHPVLTRNLPLLANRAFIVRWDNGTTVPLDSSFERHIQMTIDGLEAFARRVRPA*