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scnpilot_p_inoc_scaffold_37081_2

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(975..1736)

Top 3 Functional Annotations

Value Algorithm Source
AraC family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000380F6B1 similarity UNIREF
DB: UNIREF100
  • Identity: 92.1
  • Coverage: 253.0
  • Bit_score: 476
  • Evalue 2.00e-131
  • rbh
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJL77187.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betapr similarity UNIPROT
DB: UniProtKB
  • Identity: 92.5
  • Coverage: 252.0
  • Bit_score: 471
  • Evalue 9.00e-130
helix-turn-helix, arac domain similarity KEGG
DB: KEGG
  • Identity: 90.9
  • Coverage: 252.0
  • Bit_score: 466
  • Evalue 5.80e-129

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 762
GGCTGGGTCGTGCTGCTCGGACTGCCCGGCGACTCCATTGCCATCGACAACCCGGAGACCCAAGACCTGCTGCACTGGCTGCGCGGCCAGCGCTTCGAACGCGGCCGGCTGGAGCTGGTGACGATCTGCGCCGGCGCCGTGCTGGCGGCGCATGCCGGCGCGCTCGCGGGCCGGCGCGCGACCACGCACCACCATCACCTGGGCGAACTGCGCACGGTGGAGCCGCGCTGCGACGTGGTGGCCAACCGCGTGTTCGTGATCGACCCGCCGCTCTACAGCAGCGCGGGCGTGACGACCGGCATCGACCTGATCCTTCACCGTATCGGCGAACTCTGCGGCGAGGCGCTGGCGGCGCAGGTCGCGCAGACCATGGTGGTCGCGCTGCGGCGCGGCCCGCAAGACCCGGAGCTGTCGCCCTTCCTGGCCTACCGCAACCACCTGCATGCCGCGCTGCACCGCGTGCAGGACGCGGTCAGCGAGCAGCCGCAGGCCGACTGGAGCGTGCCGCGCATGGCCGAGGTGGCGCACACCTCGGCGCGGCATCTCACGCGGCTGTTCATGGAGCATGCGGGCGTGGCGCCGCTGGCCTACCTGCGCCGGCTGCGGCTGGCGGTGGCGCAGCTGGCGCTGGCCTCGGGCGCCAGCGTCACGCGGGCGGCGGAGCAGTCGGGCTTCGGTTCCGACACGCAGTTGCGCCGCGCCTGGCATCAGTTCGGGCTGCCGGGATCGCCGTCTGAGGCCGGGCCGGCTTTCAAGGGCTGA
PROTEIN sequence
Length: 254
GWVVLLGLPGDSIAIDNPETQDLLHWLRGQRFERGRLELVTICAGAVLAAHAGALAGRRATTHHHHLGELRTVEPRCDVVANRVFVIDPPLYSSAGVTTGIDLILHRIGELCGEALAAQVAQTMVVALRRGPQDPELSPFLAYRNHLHAALHRVQDAVSEQPQADWSVPRMAEVAHTSARHLTRLFMEHAGVAPLAYLRRLRLAVAQLALASGASVTRAAEQSGFGSDTQLRRAWHQFGLPGSPSEAGPAFKG*