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scnpilot_p_inoc_scaffold_46549_1

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: 3..599

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RCX5_9RHOO similarity UNIREF
DB: UNIREF100
  • Identity: 60.4
  • Coverage: 187.0
  • Bit_score: 216
  • Evalue 2.90e-53
RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 58.7
  • Coverage: 189.0
  • Bit_score: 216
  • Evalue 6.30e-54
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963, ECO:0000313|EMBL:CDM24149.1}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteo similarity UNIPROT
DB: UniProtKB
  • Identity: 58.7
  • Coverage: 189.0
  • Bit_score: 216
  • Evalue 3.10e-53

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Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 597
TTCTCTACTTACGCAACCTGGTGGATACGGCAAGCAATCACGCGCGCAATTGCAGACCAGGCGCGGACTATCCGAATTCCGGTTCACATGATTGAAACCATCAACAAGATGGATCAAATCCGTCGTGAGATTTTTGAGAAAACCGGTGCAGACGCGGACATTTCCACTTTGGCCATAAGAATGGAGATCCCGGAGGAAAGAATTCACAAGATCCTAAAAGCGGACATGGAAGCTATACCATTGGATCAAGTGATTGAACAAATGAATGAGGCTGACCTCATTACGTACACACAAGACCTCGGATTAATCTCACCGTCTCCCGATGCTTTAGTGGAGCGTCGGCAACTCGAATACACAGTACGCGAGGTGCTTTCGGGCTTAACTCCTCGCGAACACAAAGTCATGTGCCTGCGTTTTGGTATCGACTGCCAAGACGACATGACACTGGAAGAGGTCGGTAATCAATTCGAAGTTACTCGCGAAAGAATCCGCCAGATCGAAGCGAAAGCCTTACGTACGCTGCGCCACCCCAACCGCACCAAGCCTCTTGAGGTATTCCTGAAAAATCCGAAAATTTCAAAGGAGCATCAAGAATGA
PROTEIN sequence
Length: 199
FSTYATWWIRQAITRAIADQARTIRIPVHMIETINKMDQIRREIFEKTGADADISTLAIRMEIPEERIHKILKADMEAIPLDQVIEQMNEADLITYTQDLGLISPSPDALVERRQLEYTVREVLSGLTPREHKVMCLRFGIDCQDDMTLEEVGNQFEVTRERIRQIEAKALRTLRHPNRTKPLEVFLKNPKISKEHQE*