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scnpilot_p_inoc_scaffold_60573_2

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: 250..816

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYM6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.6
  • Coverage: 176.0
  • Bit_score: 319
  • Evalue 3.00e-84
  • rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EYR78680.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinell similarity UNIPROT
DB: UniProtKB
  • Identity: 92.6
  • Coverage: 176.0
  • Bit_score: 319
  • Evalue 4.30e-84
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 71.8
  • Coverage: 188.0
  • Bit_score: 264
  • Evalue 1.90e-68

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGTCGCAAAGCCCTGACCCGCACGACGCCGGGGCGGCCAGCGGGCGGGAGGCAACCTCCTCCCCGCCCCTTTCCTTCGACGCCGAGATCCTAGCCCTGCTGCCGCAGCTTCGACGCTATTCCCGCAGCCTGACGCGATCGGACGCGGAGAGCGAGGACCTGTTGCAGGACTGCGTCGAAAAAGCGTTGAGCCACCGGGCACAGTGGCATGGCGCGAACATCCGTGCCTGGGCCTACCGGATCATGACCAACCTGCACCTCAACGCCCGCCGCGCCGTCGCCCGGCGCCCTTCCGTGGGCATCGAGGCAGCCGAGAGCGTCGCAGAAGGCGCGCCGCCCTCCGATCCGCTGGCACGGAACAGGCTGGTACGCGCGCTCGACGCCCTGCCGAAGGAGGCGCGGGCCGTGCTGATGCTGGTTGCCGTCGAAGGCCACACCTATCAGGAAGTCGCCGAAATCCTGGATGTGCCGATCGGCACCGTCATGTCGCGCCTTTCGCGCGCCCGCCAGATGCTGCGCGAGAAGCTTCTGGCGGAAAATGTCATTCACCTGCGGAGTCCCCGATGA
PROTEIN sequence
Length: 189
MSQSPDPHDAGAASGREATSSPPLSFDAEILALLPQLRRYSRSLTRSDAESEDLLQDCVEKALSHRAQWHGANIRAWAYRIMTNLHLNARRAVARRPSVGIEAAESVAEGAPPSDPLARNRLVRALDALPKEARAVLMLVAVEGHTYQEVAEILDVPIGTVMSRLSRARQMLREKLLAENVIHLRSPR*