ggKbase home page

scnpilot_p_inoc_scaffold_72416_2

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(276..593)

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix domain protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H762_CELFA similarity UNIREF
DB: UNIREF100
  • Identity: 72.6
  • Coverage: 113.0
  • Bit_score: 154
  • Evalue 7.30e-35
helix-turn-helix domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 113.0
  • Bit_score: 154
  • Evalue 2.00e-35
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEE45696.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC similarity UNIPROT
DB: UniProtKB
  • Identity: 72.6
  • Coverage: 113.0
  • Bit_score: 154
  • Evalue 1.00e-34

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Cellulomonas fimi → Cellulomonas → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 318
ATGATCCTTGTACGTCAGGAAATCGGCGAAGTCCTTCGCGACTTCCGGCAGCAGAAGGGGCGCACCCTCCGTCAGGTCGCCAGCCGCGCCAGCGTGGCCCTCGGCTATCTGAGCGAGGTCGAGCGAGGACAGAAGGAAGCGTCGAGCGAGCTCCTCTGGAGCATCTGCGACGCGCTCGACGTGCCGATGTCGCTGGTGCTGCGTGAGGCGGCCGACCGGATCGCCGTCGCCGAGGGCCTGCTGATCCCGGACACCGTGCCGGCGGACCTCGCGTTCGACGGCTGGGGTCGTCGCCCGGAGCTCGCTCCCGTCGGCTGA
PROTEIN sequence
Length: 106
MILVRQEIGEVLRDFRQQKGRTLRQVASRASVALGYLSEVERGQKEASSELLWSICDALDVPMSLVLREAADRIAVAEGLLIPDTVPADLAFDGWGRRPELAPVG*