ggKbase home page

scnpilot_p_inoc_scaffold_74470_1

Organism: SCN_pilot_inoc_UNK

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Location: comp(1..999)

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWX7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 333.0
  • Bit_score: 665
  • Evalue 3.10e-188
  • rbh
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EYR83995.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 333.0
  • Bit_score: 665
  • Evalue 4.30e-188
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 54.0
  • Coverage: 335.0
  • Bit_score: 339
  • Evalue 1.40e-90

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 999
CTCGTCTATCCGCTCTACGAACTCCTGCTTAACGACGTGGTCGCGATCGCCTTTGCCGAAGGCGCCAGCGACCGCAGCCCGGCAATGCTGGATGCCGACGCTCTTTCGCCGGGCGGCTTCGGCCCGCACGAGAGCATGCTGCCCTATCCGCAGGCCTCGCATCCGGCCTACCGGCTTCTGACCGAGTATTTCGCCTTCCCCGAAAAATTCCTGTTCGTCGATCTCGAATTCCCGGAGGCCGGGCGCCTTGCCGGCAAGGGGCGTACGCTCGACGTCTTCCTCTATCTCAACCGTGCCGCGCCCAGCCTGGAGCGCTCGTTGACGGCGGCCGCCTTCGCGCTCGGCTGCACGCCGATCGTCAACCTGTTCCCCCAGACCGCCGAGCCGGTCAAGCTCGACAGGACGGTCACCGAGTACCGCGTCGTGCCGGACAGCCGGCGGCTGAATGCGCTGGAGGTCTACAGCATCGAGGCCGTTGCCACCGTGAATGCCGAGGGGGACGCGAGGACGCTGTCGCCGTTCTACGGCATCCGCCACGGCGTCGATGCCGACGAGGTCCGCGGCGAGGAGAAGGCGGCAGCCTGGTGGCTCTCGCACCGCCGGCCGGCCGAGGAGGAGAACCCGGGCAGCGAGGTCTTCCTGTCGCTCTCCGATCCCGACTTCAACCCGAAGAGCCTTGCCGACGACGTCCTGTCGGTGGAAACGCTCTGCCTCAACCGCAACCGGCCGGAGCGGCTGCCCTTCGGCGGCGGCCAGCCGCAATTGCGGATGGTCGAGCCGGTGCCGATGGTAAAGGGCATGCGGCTGCTGACGGTGCCGACCGCGACGATCCGCCCGCATTACGGCCAGGGCGGGCGCTGGCGGCTCATCTCGCATCTGGCGCTCAACCATCTCTCGCTCGTTTCCGATGGTGGGGTGGAGGCGCTGAAGGAAATCCTGCTGCTCTACGATTTCCGCAACTCGGCCGAAACGCGGGCATTGATCGACGGCATCACGGCG
PROTEIN sequence
Length: 333
LVYPLYELLLNDVVAIAFAEGASDRSPAMLDADALSPGGFGPHESMLPYPQASHPAYRLLTEYFAFPEKFLFVDLEFPEAGRLAGKGRTLDVFLYLNRAAPSLERSLTAAAFALGCTPIVNLFPQTAEPVKLDRTVTEYRVVPDSRRLNALEVYSIEAVATVNAEGDARTLSPFYGIRHGVDADEVRGEEKAAAWWLSHRRPAEEENPGSEVFLSLSDPDFNPKSLADDVLSVETLCLNRNRPERLPFGGGQPQLRMVEPVPMVKGMRLLTVPTATIRPHYGQGGRWRLISHLALNHLSLVSDGGVEALKEILLLYDFRNSAETRALIDGITA