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SCN_pilot_inoc_UNK

In projects: SCNpilot_P_inoc

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.08 Longest contig: 52.25 Kbp Bin length: 103.31 Mbp GC content: 54.97 %
Contigs count: 55990 Features count: 128322 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Displaying items 601-650 of 55990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_18554 6 2987 bp 61.06 3.26 92.50
scnpilot_p_inoc_scaffold_13986 6 3682 bp 33.87 3.42 48.32
scnpilot_p_inoc_scaffold_19131
Species: Shinella sp. DD12 (100%)
6 2916 bp 61.80 3.14 84.26
scnpilot_p_inoc_scaffold_18555
Species: Devosia chinhatensis (50%)
6 2987 bp 64.35 4.42 80.95
scnpilot_p_inoc_scaffold_14539
Species: Bosea sp. LC85 (50%)
6 3577 bp 67.71 4.03 89.91
scnpilot_p_inoc_scaffold_12900
Genus: Asticcacaulis (50%)
6 3898 bp 63.75 5.43 93.66
scnpilot_p_inoc_scaffold_14540 6 3577 bp 54.71 4.28 73.89
scnpilot_p_inoc_scaffold_17781 6 3080 bp 50.94 3.80 58.44
scnpilot_p_inoc_scaffold_19390 6 2885 bp 46.03 2.34 78.72
scnpilot_p_inoc_scaffold_5246
Species: CG_Rhodocyc_01 (66.67%)
6 7353 bp 60.27 5.75 81.27
scnpilot_p_inoc_scaffold_20343
Class: Oligohymenophorea (66.67%)
6 2785 bp 30.31 4.63 39.96
scnpilot_p_inoc_scaffold_18303
Phylum: Proteobacteria (50%)
6 3017 bp 60.52 3.48 95.86
scnpilot_p_inoc_scaffold_13735
Species: Verminephrobacter eiseniae (66.67%)
6 3733 bp 66.33 2.77 97.00
scnpilot_p_inoc_scaffold_19392
Order: Flavobacteriales (50%)
6 2885 bp 36.12 3.28 90.68
scnpilot_p_inoc_scaffold_13480
Species: Pseudomonas bauzanensis (50%)
6 3780 bp 69.79 3.93 96.67
scnpilot_p_inoc_scaffold_16929 6 3198 bp 28.83 3.10 54.13
scnpilot_p_inoc_scaffold_8001
Class: Betaproteobacteria (50%)
6 5489 bp 58.46 5.71 91.44
scnpilot_p_inoc_scaffold_28753
Species: Shinella sp. DD12 (83.33%)
6 2976 bp 63.51 5.49 76.31
scnpilot_p_inoc_scaffold_13225
Genus: Acidovorax (66.67%)
6 3831 bp 68.86 4.27 89.82
scnpilot_p_inoc_scaffold_19650
Species: Variovorax paradoxus (83.33%)
6 2857 bp 56.56 3.26 84.63
scnpilot_p_inoc_scaffold_12394
Class: Gammaproteobacteria (50%)
6 4027 bp 62.88 2.53 88.58
scnpilot_p_inoc_scaffold_13994
Order: Clostridiales (100%)
6 3680 bp 36.68 2.61 91.71
scnpilot_p_inoc_scaffold_16675 6 3231 bp 56.64 4.50 73.91
scnpilot_p_inoc_scaffold_18819 6 2957 bp 64.90 3.40 64.32
scnpilot_p_inoc_scaffold_22707
Order: Rhizobiales (66.67%)
6 2561 bp 61.54 2.93 96.64
scnpilot_p_inoc_scaffold_14803
Species: Bosea sp. LC85 (100%)
6 3529 bp 66.00 3.36 77.61
scnpilot_p_inoc_scaffold_13483 6 3779 bp 42.71 29.73 89.55
scnpilot_p_inoc_scaffold_12908
Order: Rhizobiales (66.67%)
6 3896 bp 63.99 4.16 78.62
scnpilot_p_inoc_scaffold_13484
Class: Alphaproteobacteria (50%)
6 3779 bp 50.22 2.26 86.77
scnpilot_p_inoc_scaffold_17021
Species: Chlamydia sp. 'Rubis' (66.67%)
6 3185 bp 40.19 2.26 75.16
scnpilot_p_inoc_scaffold_15213 6 3459 bp 52.10 2.99 67.91
scnpilot_p_inoc_scaffold_14037
Species: Aeromonas hydrophila (50%)
6 3672 bp 64.22 3.59 86.52
scnpilot_p_inoc_scaffold_13485
Order: Sphingobacteriales (66.67%)
6 3779 bp 41.20 2.58 88.20
scnpilot_p_inoc_scaffold_16678 6 3231 bp 33.27 29.62 67.32
scnpilot_p_inoc_scaffold_10022
Species: Chlamydia sp. 'Rubis' (83.33%)
6 4693 bp 33.43 2.56 95.31
scnpilot_p_inoc_scaffold_23478
Order: Rhizobiales (66.67%)
6 2496 bp 63.98 3.13 95.91
scnpilot_p_inoc_scaffold_17279
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (83.33%)
6 3150 bp 64.63 4.19 77.81
scnpilot_p_inoc_scaffold_16167
Species: Xanthobacter autotrophicus (50%)
6 3306 bp 59.59 4.85 81.94
scnpilot_p_inoc_scaffold_15727
Species: BJP_08E140C01_Anaerolineales_40_8 (83.33%)
6 3371 bp 45.95 2.98 77.07
scnpilot_p_inoc_scaffold_13743
Species: Comamonas aquatica (83.33%)
6 3730 bp 67.00 3.54 90.97
scnpilot_p_inoc_scaffold_16936
Species: Variovorax sp. CF313 (50%)
6 3196 bp 66.99 3.71 91.24
scnpilot_p_inoc_scaffold_13488 6 3778 bp 55.93 4.61 59.00
scnpilot_p_inoc_scaffold_19657
Order: Burkholderiales (50%)
6 2857 bp 67.97 4.36 91.25
scnpilot_p_inoc_scaffold_16681
Order: Rhizobiales (50%)
6 3231 bp 61.53 3.02 84.59
scnpilot_p_inoc_scaffold_14041
Species: Paracoccus aminophilus (50%)
6 3672 bp 65.82 2.94 86.68
scnpilot_p_inoc_scaffold_17538
Genus: Candidatus Accumulibacter (50%)
6 3114 bp 70.71 6.17 75.82
scnpilot_p_inoc_scaffold_10539
Order: Hydrogenophilales (50%)
6 4524 bp 59.64 7.33 84.62
scnpilot_p_inoc_scaffold_15732
Order: Rhizobiales (83.33%)
6 3370 bp 67.57 4.36 87.69
scnpilot_p_inoc_scaffold_6644
Genus: Devosia (50%)
6 6238 bp 62.82 3.61 94.60
scnpilot_p_inoc_scaffold_12661
Species: Bosea sp. LC85 (50%)
6 3962 bp 64.29 4.20 87.68
Displaying items 601-650 of 55990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.