ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.08 Longest contig: 52.25 Kbp Bin length: 103.31 Mbp GC content: 54.97 %

Contigs count: 55990 Features count: 128322 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19

Displaying items 151-200 of 55990 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_p_inoc_scaffold_34878 Species: Shinella sp. DD12 (66.67%)	3	1827 bp	62.40	2.46	103.94
scnpilot_p_inoc_scaffold_60403 Species: Sphingobacterium paucimobilis (100%)	2	1178 bp	45.33	1.02	103.91
scnpilot_p_inoc_scaffold_42270 Species: Brachybacterium phenoliresistens (50%)	2	1565 bp	63.90	2.11	103.90
scnpilot_p_inoc_scaffold_67561 Species: Pseudomonas alcaligenes (50%)	2	1080 bp	61.11	1.39	103.89
scnpilot_p_inoc_scaffold_59476 Species: Mesorhizobium metallidurans (50%)	2	1193 bp	64.12	2.77	103.86
scnpilot_p_inoc_scaffold_47469 Species: Pseudogymnoascus pannorum (50%)	2	1427 bp	63.98	2.10	103.85
scnpilot_p_inoc_scaffold_119816 Species: Bosea sp. LC85 (100%)	2	1043 bp	69.42	2.59	103.84
scnpilot_p_inoc_scaffold_70455 Species: Nitratireductor basaltis (50%)	2	1046 bp	74.57	2.29	103.82
scnpilot_p_inoc_scaffold_67959 Species: Niastella koreensis (50%)	2	1075 bp	39.26	2.37	103.81
scnpilot_p_inoc_scaffold_61682 Species: Porphyromonas macacae (50%)	2	1159 bp	45.99	2.20	103.80
scnpilot_p_inoc_scaffold_69213 Species: Desulfarculus baarsii (100%)	2	1061 bp	63.71	1.98	103.77
scnpilot_p_inoc_scaffold_50646 Species: Afipia broomeae (66.67%)	3	1356 bp	63.94	2.21	103.76
scnpilot_p_inoc_scaffold_73212 Species: Dyella japonica (66.67%)	3	1015 bp	67.78	1.92	103.74
scnpilot_p_inoc_scaffold_64326 Species: Chlamydia sp. 'Rubis' (50%)	2	1122 bp	35.47	2.94	103.74
scnpilot_p_inoc_scaffold_63839 Species: Methylibium sp. T29-B (100%)	2	1128 bp	66.22	2.93	103.72
scnpilot_p_inoc_scaffold_15993 Species: Leishmania infantum (50%)	2	3332 bp	72.69	4.32	103.72
scnpilot_p_inoc_scaffold_46225 Species: Candidatus Solibacter usitatus (50%)	2	1458 bp	70.37	2.47	103.70
scnpilot_p_inoc_scaffold_46012 Order: Hydrogenophilales (100%)	3	1464 bp	70.63	385.35	103.69
scnpilot_p_inoc_scaffold_56079 Genus: Afipia (66.67%)	3	1250 bp	62.96	2.04	103.68
scnpilot_p_inoc_scaffold_39356 Species: Shinella sp. DD12 (75%)	4	1658 bp	64.78	2.53	103.68
scnpilot_p_inoc_scaffold_66896	4	1088 bp	42.46	1.00	103.68
scnpilot_p_inoc_scaffold_51283 Order: Burkholderiales (66.67%)	3	1341 bp	59.51	2.91	103.58
scnpilot_p_inoc_scaffold_106546 Order: Hydrogenophilales (66.67%)	3	1454 bp	61.55	24.55	103.58
scnpilot_p_inoc_scaffold_37888 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated (50%)	2	1709 bp	65.48	3.51	103.57
scnpilot_p_inoc_scaffold_64371 Species: Flavobacterium rivuli (50%)	2	1121 bp	36.31	2.14	103.57
scnpilot_p_inoc_scaffold_31258 Class: Bacteroidia (66.67%)	3	1996 bp	48.90	2.03	103.56
scnpilot_p_inoc_scaffold_62085 Species: Hylemonella gracilis (100%)	2	1153 bp	67.04	3.77	103.56
scnpilot_p_inoc_scaffold_77754 Species: Pseudomonas xanthomarina (50%)	2	1507 bp	65.36	15.93	103.52
scnpilot_p_inoc_scaffold_47843 Species: Jejuia pallidilutea (50%)	2	1418 bp	35.54	1.38	103.46
scnpilot_p_inoc_scaffold_54449 Species: Ochrobactrum anthropi (50%)	2	1279 bp	60.99	2.46	103.44
scnpilot_p_inoc_scaffold_51084 Species: Pedobacter kyungheensis (50%)	2	1346 bp	37.96	1.67	103.42
scnpilot_p_inoc_scaffold_53921 Species: Ochrobactrum intermedium (50%)	2	1288 bp	53.57	3.26	103.42
scnpilot_p_inoc_scaffold_56523 Species: Sphingomonas wittichii (100%)	2	1242 bp	68.92	2.42	103.38
scnpilot_p_inoc_scaffold_13709 Species: Delftia sp. RIT313 (50%)	2	3738 bp	56.23	11.04	103.37
scnpilot_p_inoc_scaffold_73627 Species: Phytophthora parasitica (50%)	2	1010 bp	46.73	1.49	103.37
scnpilot_p_inoc_scaffold_63381 Species: Emiliania huxleyi (50%)	2	1135 bp	65.90	4.63	103.35
scnpilot_p_inoc_scaffold_34202 Species: Porphyromonadaceae bacterium ING2-E5B (50%)	2	1855 bp	43.83	2.75	103.34
scnpilot_p_inoc_scaffold_44647	3	1498 bp	57.54	3.10	103.34
scnpilot_p_inoc_scaffold_55005 Species: R_Elusimicrobia_64_13 (50%)	2	1269 bp	48.46	2.13	103.31
scnpilot_p_inoc_scaffold_38119 Species: Afipia broomeae (50%)	4	1702 bp	61.69	3.17	103.29
scnpilot_p_inoc_scaffold_63734 Species: Ectocarpus siliculosus (50%)	2	1130 bp	50.53	1.33	103.27
scnpilot_p_inoc_scaffold_51118 Species: Pedobacter sp. V48 (50%)	2	1345 bp	42.97	1.78	103.27
scnpilot_p_inoc_scaffold_37577	3	1720 bp	60.99	5.06	103.26
scnpilot_p_inoc_scaffold_73277 Species: Devosia limi (50%)	2	1014 bp	69.72	1.48	103.25
scnpilot_p_inoc_scaffold_39969 Species: Oceanibaculum indicum (50%)	2	1636 bp	41.99	2.02	103.24
scnpilot_p_inoc_scaffold_48853 Species: mine drainage metagenome (50%)	2	1395 bp	68.17	135.38	103.23
scnpilot_p_inoc_scaffold_42508 Species: Shinella sp. DD12 (100%)	2	1558 bp	63.54	3.27	103.21
scnpilot_p_inoc_scaffold_43501 Species: Rhizobium sp. R2-400B4 (50%)	2	1529 bp	69.65	4.02	103.20
scnpilot_p_inoc_scaffold_35869 Phylum: Proteobacteria (100%)	3	1785 bp	70.25	2.94	103.19
scnpilot_p_inoc_scaffold_74322 Species: Bacteroides sp. CAG:1076 (50%)	2	1003 bp	28.51	1.20	103.19

Displaying items 151-200 of 55990 in total

SCN_pilot_inoc_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCN_pilot_inoc_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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