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SCN_pilot_inoc_UNK

In projects: SCNpilot_P_inoc

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.08 Longest contig: 52.25 Kbp Bin length: 103.31 Mbp GC content: 54.97 %
Contigs count: 55990 Features count: 128322 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 19
Displaying items 1-50 of 55990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_72943
Class: Alphaproteobacteria (66.67%)
3 1018 bp 62.08 2.36 119.06
scnpilot_p_inoc_scaffold_72637
Species: Ralstonia sp. PBA (50%)
2 1021 bp 56.81 1.18 116.65
scnpilot_p_inoc_scaffold_69520
Species: Geobacter metallireducens (50%)
2 1057 bp 65.56 2.55 116.08
scnpilot_p_inoc_scaffold_71953 2 1029 bp 35.57 1.46 116.04
scnpilot_p_inoc_scaffold_72675 2 1021 bp 46.82 2.35 115.77
scnpilot_p_inoc_scaffold_69225
Species: Mesorhizobium plurifarium (50%)
2 1061 bp 71.25 1.84 115.36
scnpilot_p_inoc_scaffold_48214
Domain: Bacteria (50%)
4 1410 bp 49.57 1.28 114.47
scnpilot_p_inoc_scaffold_57964
Order: Sphingomonadales (50%)
4 1217 bp 57.03 1.73 114.38
scnpilot_p_inoc_scaffold_74373 2 1002 bp 45.71 1.00 114.07
scnpilot_p_inoc_scaffold_63444
Species: Mesorhizobium sp. ORS3324 (50%)
2 1134 bp 65.34 2.12 114.02
scnpilot_p_inoc_scaffold_46867
Species: Shewanella denitrificans (50%)
2 1442 bp 41.40 1.87 113.38
scnpilot_p_inoc_scaffold_47061
Species: Shinella sp. DD12 (66.67%)
3 1437 bp 67.36 3.97 113.36
scnpilot_p_inoc_scaffold_62753
Species: Bosea sp. LC85 (50%)
2 1144 bp 62.06 2.49 113.29
scnpilot_p_inoc_scaffold_69866
Species: RBG_13_Chloroflexi_54_9_curated (50%)
2 1053 bp 59.16 2.56 112.82
scnpilot_p_inoc_scaffold_55622 3 1258 bp 44.59 1.43 112.80
scnpilot_p_inoc_scaffold_62342
Species: Sphingobium chinhatense (50%)
2 1150 bp 64.09 2.61 112.70
scnpilot_p_inoc_scaffold_65031
Species: Comamonadaceae bacterium B1 (66.67%)
3 1113 bp 59.66 3.64 112.40
scnpilot_p_inoc_scaffold_59714
Species: Micromonas sp. RCC299 (50%)
2 1189 bp 69.72 4.16 112.28
scnpilot_p_inoc_scaffold_67579 3 1080 bp 35.37 2.36 112.22
scnpilot_p_inoc_scaffold_60467
Species: Caulobacter vibrioides (50%)
2 1177 bp 59.39 2.04 112.15
scnpilot_p_inoc_scaffold_61300
Species: Rhizobium freirei (50%)
2 1164 bp 63.75 2.58 111.86
scnpilot_p_inoc_scaffold_54504
Species: Agrobacterium tumefaciens (50%)
2 1278 bp 57.82 2.46 111.50
scnpilot_p_inoc_scaffold_42920
Species: Rhizobium etli (50%)
2 1546 bp 64.94 2.72 111.38
scnpilot_p_inoc_scaffold_80838
Order: Burkholderiales (100%)
3 1638 bp 71.73 3.85 111.36
scnpilot_p_inoc_scaffold_44320 2 1507 bp 65.10 13.84 111.28
scnpilot_p_inoc_scaffold_60937
Species: GWF1_Rhodobacteraceae_65_7_curated (50%)
2 1170 bp 69.83 2.82 110.51
scnpilot_p_inoc_scaffold_69420
Species: Arthrobacter phenanthrenivorans (50%)
2 1058 bp 59.55 1.98 110.30
scnpilot_p_inoc_scaffold_74513 2 1001 bp 51.05 1.20 110.29
scnpilot_p_inoc_scaffold_72933
Class: Betaproteobacteria (66.67%)
3 1423 bp 62.83 23.51 110.26
scnpilot_p_inoc_scaffold_51186
Class: Betaproteobacteria (50%)
4 1344 bp 66.00 3.79 110.04
scnpilot_p_inoc_scaffold_41063
Species: Neochlamydia sp. EPS4 (50%)
2 1602 bp 41.70 1.69 109.93
scnpilot_p_inoc_scaffold_56370
Species: marine sediment metagenome (50%)
2 1245 bp 70.04 16.51 109.88
scnpilot_p_inoc_scaffold_63605
Species: Bacteroides fragilis (50%)
2 1132 bp 54.95 1.59 109.45
scnpilot_p_inoc_scaffold_58011
Species: Sphingobium sp. SYK-6 (50%)
2 1217 bp 63.93 2.34 109.45
scnpilot_p_inoc_scaffold_65989
Species: Hyphomicrobium nitrativorans (50%)
2 1100 bp 62.91 1.91 109.36
scnpilot_p_inoc_scaffold_65197
Species: Sphingobium ummariense (50%)
2 1110 bp 64.86 3.24 109.19
scnpilot_p_inoc_scaffold_66591 2 1092 bp 43.41 1.92 109.07
scnpilot_p_inoc_scaffold_39257 2 2015 bp 67.89 4.17 108.98
scnpilot_p_inoc_scaffold_65726
Species: Variovorax sp. CF313 (50%)
2 1104 bp 70.29 4.35 108.97
scnpilot_p_inoc_scaffold_72696
Species: Shinella sp. DD12 (50%)
2 1021 bp 55.04 2.20 108.72
scnpilot_p_inoc_scaffold_26757
Species: Bacillus cellulosilyticus (66.67%)
3 2258 bp 45.00 1.26 108.55
scnpilot_p_inoc_scaffold_73147
Class: Betaproteobacteria (66.67%)
3 1015 bp 66.50 78.18 108.47
scnpilot_p_inoc_scaffold_53031
Order: Burkholderiales (66.67%)
3 1306 bp 62.79 2.76 108.42
scnpilot_p_inoc_scaffold_67187
Species: Rhizobium gallicum (50%)
2 1085 bp 60.92 2.76 108.39
scnpilot_p_inoc_scaffold_60533 3 1176 bp 38.52 2.42 107.91
scnpilot_p_inoc_scaffold_39326
Species: Microvirga lotononidis (50%)
2 1659 bp 65.64 2.89 107.78
scnpilot_p_inoc_scaffold_60425
Species: Methylobacterium nodulans (50%)
2 1178 bp 64.43 6.37 107.73
scnpilot_p_inoc_scaffold_115086
Species: Agrobacterium tumefaciens (50%)
2 1001 bp 66.03 3.60 107.59
scnpilot_p_inoc_scaffold_62621
Species: Alicycliphilus denitrificans (50%)
2 1146 bp 70.77 2.36 107.59
scnpilot_p_inoc_scaffold_69543
Species: Variovorax paradoxus (50%)
2 1057 bp 65.85 2.27 107.57
Displaying items 1-50 of 55990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.