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scnpilot_p_inoc_scaffold_655

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_655_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..285
DNA (285bp) protein (95aa)
RHS repeat-associated core domain-containing protein id=7719057 bin=BACIGN_2 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AEV97055.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niast
scnpilot_p_inoc_scaffold_655_2
unknown

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267..446
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_655_3
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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897..1370
DNA (474bp) protein (158aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=7719058 bin=BACIGN_2 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA42316.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fl
scnpilot_p_inoc_scaffold_655_4
BACIGN_2, BACIGN_2, BACIGN_2, BACIGN_2, Unknown_CP, Bacteria

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1363..2538
DNA (1176bp) protein (392aa)
id=7719059 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
id=7719059 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
scnpilot_p_inoc_scaffold_655_5
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

2607..3332
DNA (726bp) protein (242aa)
Uncharacterized protein id=7719060 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
scnpilot_p_inoc_scaffold_655_6
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

3488..5356
DNA (1869bp) protein (623aa)
tonb-dependent receptor id=7719061 bin=BACIGN_2 species=Parabacteroides goldsteinii genus=Parabacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Iron complex outermembrane recepter protein; K02014 iron complex outermembrane recepter protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
tonb-dependent receptor
scnpilot_p_inoc_scaffold_655_7
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

5341..6453
DNA (1113bp) protein (371aa)
cell surface protein id=7719062 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
lipoprotein Tax=GWF2_RIF_IGX_33_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_655_8
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

6450..7535
DNA (1086bp) protein (362aa)
hypothetical protein
id=7719063 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
scnpilot_p_inoc_scaffold_655_9
BACIGN_2, BACIGN_2, BACIGN_2, BACIGN_2, Unknown_CP, Bacteria

Not on your lists

7548..7991
DNA (444bp) protein (148aa)
id=7719064 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
id=7719064 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
scnpilot_p_inoc_scaffold_655_10
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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comp(8059..8373)
DNA (315bp) protein (105aa)
translation initiation factor Sui1; K03113 translation initiation factor 1 id=7719065 bin=BACIGN_2 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=BACIGN_2 organism_group=Unknown_CP
translation initiation factor eIF-1/SUI1-like protein
Translation initiation factor Sui1 {ECO:0000313|EMBL:KIY11295.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
scnpilot_p_inoc_scaffold_655_11
BACIGN_2, BACIGN_2, BACIGN_2, BACIGN_2, Unknown_CP, Bacteria

Not on your lists

comp(8379..8933)
DNA (555bp) protein (185aa)
id=7719066 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
id=7719066 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
scnpilot_p_inoc_scaffold_655_12
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

9030..9737
DNA (708bp) protein (236aa)
plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] id=7719067 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51); K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase
scnpilot_p_inoc_scaffold_655_13
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

9734..10015
DNA (282bp) protein (94aa)
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=7719068 bin=BACIGN_2 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_5
gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7)
scnpilot_p_inoc_scaffold_655_14
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

10012..10764
DNA (753bp) protein (251aa)
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] id=7719069 bin=BACIGN_2 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
scnpilot_p_inoc_scaffold_655_15
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(10752..11705)
DNA (954bp) protein (318aa)
ADP-heptose--LPS heptosyltransferase id=7719070 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
glycosyl transferase, family 9 Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
ADP-heptose--LPS heptosyltransferase
scnpilot_p_inoc_scaffold_655_16
BACIGN_2, BACIGN_2, BACIGN_2, BACIGN_2, Unknown_CP, Bacteria

Not on your lists

comp(11776..12243)
DNA (468bp) protein (156aa)
id=7719071 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
id=7719071 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
scnpilot_p_inoc_scaffold_655_17
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

12368..13342
DNA (975bp) protein (325aa)
hypothetical protein id=7719072 bin=BACIGN_2 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
hypothetical protein
scnpilot_p_inoc_scaffold_655_18
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

13342..14460
DNA (1119bp) protein (373aa)
group 1 glycosyl transferase id=7719073 bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Glycosyltransferase Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
group 1 glycosyl transferase
scnpilot_p_inoc_scaffold_655_19
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

14480..15361
DNA (882bp) protein (294aa)
hypothetical protein id=7719074 bin=BACIGN_2 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
scnpilot_p_inoc_scaffold_655_20
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15415..15957
DNA (543bp) protein (181aa)
isochorismatase hydrolase id=7719075 bin=BACIGN_2 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Isochorismatase {ECO:0000313|EMBL:GAO30549.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
isochorismatase hydrolase
scnpilot_p_inoc_scaffold_655_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15954..17987
DNA (2034bp) protein (678aa)
acetyl-CoA synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] id=7719076 bin=BACIGN_2 species=unknown genus=Chlorobaculum taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-R
acs; acetyl-CoA synthetase
scnpilot_p_inoc_scaffold_655_22
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

18078..20573
DNA (2496bp) protein (832aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] id=7719077 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
nucleotidyl transferase
scnpilot_p_inoc_scaffold_655_23
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

20575..21045
DNA (471bp) protein (157aa)
ptsN; Ntr-type phosphotransferase system IIA domain protein; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] id=7719078 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
ptsN; Ntr-type phosphotransferase system IIA domain-containing protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
scnpilot_p_inoc_scaffold_655_24
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists


21047..22297
DNA (1251bp) protein (417aa)
Histidine--tRNA ligase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] id=7719079 bin=BACIGN_2 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
histidine--tRNA ligase (EC:6.1.1.21)
Tax=BJP_IG2069_Ignavibacteriae_38_11
scnpilot_p_inoc_scaffold_655_25
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

22316..23560
DNA (1245bp) protein (415aa)
Signal transduction histidine kinase id=7719080 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Signal transduction histidine kinase Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
Signal transduction histidine kinase
scnpilot_p_inoc_scaffold_655_26
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

23557..24684
DNA (1128bp) protein (376aa)
cell cycle protein; K03588 cell division protein FtsW id=7719081 bin=BACIGN_2 species=Prosthecochloris vibrioformis genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
cell cycle protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
scnpilot_p_inoc_scaffold_655_27
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

24745..25179
DNA (435bp) protein (145aa)
Putative transcriptional regulator id=7719082 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
Putative transcriptional regulator Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
transcriptional regulator
scnpilot_p_inoc_scaffold_655_28
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

25228..26235
DNA (1008bp) protein (336aa)
ribosome assembly protein 4 id=7719083 bin=BACIGN_2 species=Arthrospira sp. PCC 8005 genus=Arthrospira taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
WD40 repeat-containing protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
serine/threonine protein kinase with WD40 repeats
scnpilot_p_inoc_scaffold_655_29
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

26239..26949
DNA (711bp) protein (237aa)
tpn50; OmpA family outer membrane protein id=7719084 bin=BACIGN_2 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
ompA; OmpA family outer membrane protein Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
tpn50; OmpA family outer membrane protein
scnpilot_p_inoc_scaffold_655_30
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

27221..27787
DNA (567bp) protein (189aa)
translation elongation factor P (EF-P); K02356 elongation factor P id=7719085 bin=BACIGN_2 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
translation elongation factor P Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
translation elongation factor P
Displaying items 1-30 of 46 in total

View Taxonomy