ggKbase home page

scnpilot_p_inoc_scaffold_22_31

Organism: SCNpilot_P_inoc_Rhodobacter_64_50

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: 24922..25521

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily id=2798761 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + similarity UNIREF
DB: UNIREF100
  • Identity: 76.4
  • Coverage: 195.0
  • Bit_score: 288
  • Evalue 6.10e-75
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWF1_Rhodobacteraceae_65_7_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 76.4
  • Coverage: 195.0
  • Bit_score: 288
  • Evalue 8.50e-75
RNA polymerase, sigma subunit, ECF family similarity KEGG
DB: KEGG
  • Identity: 71.1
  • Coverage: 194.0
  • Bit_score: 264
  • Evalue 2.70e-68

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWF1_Rhodobacteraceae_65_7_curated → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 600
ATGCCCCTTGACGTTTCCTCAGACCTGCCCGACGCGGTTCTGCTTGCCCGGTATGCGGCGGGTGACCGGGCGGCTGCGCGGGTTCTGACCTTGCGGTTCACGCCGCGCGTTCTGGGATATGCCACCCGTCTGCTGGGCGACCGTGCCGAGGCCGAGGATGTGGCGCAGGAAGCCATGTTGCGGCTCTGGCGCATTGCGCCGGACTGGCGCGCGGAAGAGGCGCAGGTCAGCACATGGCTGTATCGTGTGGTCACCAATCTGGTGACCGACCGGCAGCGCGCGCGGGCGAGGCGTCCCCTGGATCTGCCGGAGACGGCACCTGAGGTGGCGGATGATGCGCCTGGCGCGGCGGCGGCGATGATGCAACGCGACAGGATGGCCGCACTCGACACCGCCCTGACTGCCCTGCCGGAGCGGCAGCGTCAGGCGGTGGCGTTGCGCCACCTTGAGGGACTTGCGAATCCCGAGATCGCCAGGATCATGGGCATCGGGGTAGAGGCTGTGGAAAGCCTGACCGCACGGGGCAAACGCGCCCTTGCTGCGGTCTTGTCGGGCCAGCGCGCGGCGCTGGGCTATGAGGATGAGGAGACCGGGACATGA
PROTEIN sequence
Length: 200
MPLDVSSDLPDAVLLARYAAGDRAAARVLTLRFTPRVLGYATRLLGDRAEAEDVAQEAMLRLWRIAPDWRAEEAQVSTWLYRVVTNLVTDRQRARARRPLDLPETAPEVADDAPGAAAAMMQRDRMAALDTALTALPERQRQAVALRHLEGLANPEIARIMGIGVEAVESLTARGKRALAAVLSGQRAALGYEDEETGT*