ggKbase | organisms

Consensus taxonomy: Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 703.49 Longest contig: 8.64 Kbp Bin length: 838.02 Kbp GC content: 65.18 %

Contigs count: 490 Features count: 1273 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 14 / 55 BSCG 11 / 51 MC: 2 ASCG 4 / 38

Description

not a true bin, the Thiobacillus are fragmented. Subassemblies needed.

Displaying items 151-200 of 490 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_p_inoc_scaffold_101818 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1175 bp	65.79	576.26	86.04
scnpilot_p_inoc_scaffold_54853 Species: Hyphomicrobium denitrificans (50%)	2	1681 bp	65.79	631.50	101.37
scnpilot_p_inoc_scaffold_102015 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1421 bp	70.02	709.57	55.52
scnpilot_p_inoc_scaffold_34520 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	2133 bp	65.26	620.39	99.86
scnpilot_p_inoc_scaffold_102305 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)	2	1285 bp	66.85	515.84	99.69
scnpilot_p_inoc_scaffold_71120 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1039 bp	70.84	770.93	99.33
scnpilot_p_inoc_scaffold_44058 Species: Sedimenticola sp. SIP-G1 (50%)	2	1514 bp	67.90	639.63	99.08
scnpilot_p_inoc_scaffold_102325 Species: CG_Hydro_01 (50%)	2	1183 bp	68.98	621.17	100.17
scnpilot_p_inoc_scaffold_59042 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1200 bp	69.33	652.88	96.00
scnpilot_p_inoc_scaffold_40428 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1622 bp	68.31	804.19	100.06
scnpilot_p_inoc_scaffold_66051 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1100 bp	69.45	732.00	99.55
scnpilot_p_inoc_scaffold_106166 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1574 bp	61.56	786.98	74.33
scnpilot_p_inoc_scaffold_38712 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	2161 bp	65.53	767.91	91.35
scnpilot_p_inoc_scaffold_64447 Species: Thiobacillus denitrificans (50%)	2	1120 bp	65.09	700.58	88.39
scnpilot_p_inoc_scaffold_69458 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1058 bp	67.86	774.10	98.39
scnpilot_p_inoc_scaffold_103113 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1132 bp	68.64	568.07	96.73
scnpilot_p_inoc_scaffold_70924 Species: Thiobacillus denitrificans (100%)	2	1041 bp	71.76	771.04	100.00
scnpilot_p_inoc_scaffold_80855 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1396 bp	64.04	617.73	88.97
scnpilot_p_inoc_scaffold_40954 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1605 bp	62.99	792.24	90.28
scnpilot_p_inoc_scaffold_81378 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1577 bp	69.50	783.48	100.06
scnpilot_p_inoc_scaffold_46100 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1461 bp	66.39	730.90	98.97
scnpilot_p_inoc_scaffold_61533 Species: Sulfuricella sp. T08 (50%)	2	1161 bp	63.22	701.81	96.64
scnpilot_p_inoc_scaffold_41047 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1958 bp	66.19	702.66	97.75
scnpilot_p_inoc_scaffold_81511 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1339 bp	68.78	805.68	101.05
scnpilot_p_inoc_scaffold_81802 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1619 bp	65.78	654.48	70.78
scnpilot_p_inoc_scaffold_65612 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1105 bp	68.42	736.15	98.01
scnpilot_p_inoc_scaffold_37271 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	2166 bp	67.27	716.27	63.99
scnpilot_p_inoc_scaffold_43221 Species: Thiobacillus denitrificans (50%)	2	2043 bp	66.08	651.91	81.35
scnpilot_p_inoc_scaffold_36494 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1761 bp	65.99	810.65	93.87
scnpilot_p_inoc_scaffold_57405 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1655 bp	70.15	784.80	99.88
scnpilot_p_inoc_scaffold_24655 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	2405 bp	68.36	508.69	90.44
scnpilot_p_inoc_scaffold_62969 Species: Thiobacillus denitrificans (50%)	2	1141 bp	66.52	769.06	89.66
scnpilot_p_inoc_scaffold_67322 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)	2	2091 bp	64.71	553.87	95.98
scnpilot_p_inoc_scaffold_67834 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1077 bp	66.39	776.46	84.40
scnpilot_p_inoc_scaffold_61811 Species: Polaromonas sp. JS666 (50%)	2	1158 bp	67.01	632.77	100.26
scnpilot_p_inoc_scaffold_30422 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	2357 bp	63.85	704.62	86.30
scnpilot_p_inoc_scaffold_61045 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	1168 bp	67.12	648.42	98.12
scnpilot_p_inoc_scaffold_37287 Species: CG_Hydro_01 (50%)	2	2897 bp	67.73	762.01	86.57
scnpilot_p_inoc_scaffold_44103 Species: Thiobacillus denitrificans (50%)	2	1513 bp	69.40	731.66	100.13
scnpilot_p_inoc_scaffold_67582 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1670 bp	63.41	616.26	90.36
scnpilot_p_inoc_scaffold_67071 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1086 bp	60.50	734.25	78.73
scnpilot_p_inoc_scaffold_69497 Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)	2	1701 bp	68.61	744.44	102.47
scnpilot_p_inoc_scaffold_35557 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	2137 bp	67.85	523.14	100.80
scnpilot_p_inoc_scaffold_55765 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)	2	1747 bp	64.74	606.10	100.11
scnpilot_p_inoc_scaffold_52490 Species: GWE1_Thiobacillus_62_9_curated (100%)	2	1317 bp	66.59	536.33	100.46
scnpilot_p_inoc_scaffold_22780 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	2556 bp	66.82	752.35	96.24
scnpilot_p_inoc_scaffold_64504 Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)	2	2264 bp	65.72	751.26	66.39
scnpilot_p_inoc_scaffold_85465 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1294 bp	66.00	619.24	98.76
scnpilot_p_inoc_scaffold_53298 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1301 bp	65.33	711.49	83.70
scnpilot_p_inoc_scaffold_41348 Species: GWE1_Thiobacillus_62_9_curated (50%)	2	1593 bp	63.90	518.08	94.73

Displaying items 151-200 of 490 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (SCNpilot_P_inoc_Thiobacillus_fragments_65_690_partial) and add all its contigs / scaffolds to the organism you choose below

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Other organism

SCNpilot_P_inoc_Thiobacillus_fragments_65_690_partial

SCNpilot_P_inoc_Hydrogenophilales_65_703

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

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