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SCNpilot_P_inoc_Thiobacillus_fragments_65_690_partial

SCNpilot_P_inoc_Hydrogenophilales_65_703
In projects: SCNpilot_P_inoc

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

not a true bin, the Thiobacillus are fragmented. Subassemblies needed.

Displaying items 251-300 of 490 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_51393
Species: R_Betaproteobacteria_61_14 (50%)
2 1339 bp 64.45 811.73 93.88
scnpilot_p_inoc_scaffold_122518
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1014 bp 64.79 546.75 86.69
scnpilot_p_inoc_scaffold_90114
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1437 bp 69.80 743.84 100.21
scnpilot_p_inoc_scaffold_68224
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1072 bp 66.51 635.68 86.47
scnpilot_p_inoc_scaffold_63593
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1132 bp 69.17 793.20 99.38
scnpilot_p_inoc_scaffold_52818
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1529 bp 64.55 622.37 92.22
scnpilot_p_inoc_scaffold_64571
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1370 bp 64.67 557.63 58.03
scnpilot_p_inoc_scaffold_124786
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1124 bp 67.44 522.20 99.82
scnpilot_p_inoc_scaffold_72560
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1859 bp 64.39 673.67 92.47
scnpilot_p_inoc_scaffold_91266
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1411 bp 64.56 505.71 102.48
scnpilot_p_inoc_scaffold_40308
Species: Thiobacillus denitrificans (50%)
2 1626 bp 72.94 786.53 97.05
scnpilot_p_inoc_scaffold_125526
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1442 bp 65.88 678.43 97.16
scnpilot_p_inoc_scaffold_63349
Species: Thiobacillus denitrificans (50%)
2 1136 bp 69.54 772.32 96.39
scnpilot_p_inoc_scaffold_126145
Species: Hyphomicrobium denitrificans (50%)
2 1627 bp 63.18 646.56 102.15
scnpilot_p_inoc_scaffold_28145
Species: Thiobacillus denitrificans (100%)
2 2169 bp 66.62 752.90 99.31
scnpilot_p_inoc_scaffold_57261
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1229 bp 62.65 730.11 92.51
scnpilot_p_inoc_scaffold_57520
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1225 bp 69.31 692.57 100.16
scnpilot_p_inoc_scaffold_72834
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1019 bp 64.38 756.92 85.38
scnpilot_p_inoc_scaffold_70299
Species: Thiobacillus denitrificans (50%)
2 1048 bp 63.84 682.16 99.62
scnpilot_p_inoc_scaffold_68764
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
2 1066 bp 64.54 678.94 91.74
scnpilot_p_inoc_scaffold_130472
Species: Thiobacillus denitrificans (100%)
2 1001 bp 68.53 592.66 76.12
scnpilot_p_inoc_scaffold_56923
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1235 bp 64.94 723.28 97.17
scnpilot_p_inoc_scaffold_47548
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1426 bp 68.72 697.41 97.62
scnpilot_p_inoc_scaffold_59463
Species: Thiobacillus denitrificans (50%)
2 1193 bp 73.18 671.79 100.34
scnpilot_p_inoc_scaffold_37410
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1726 bp 63.85 803.27 97.33
scnpilot_p_inoc_scaffold_94384
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1274 bp 63.50 671.70 90.66
scnpilot_p_inoc_scaffold_67451
Species: Thiobacillus denitrificans (50%)
2 1081 bp 64.57 768.32 99.91
scnpilot_p_inoc_scaffold_48068
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1413 bp 63.55 590.98 100.21
scnpilot_p_inoc_scaffold_70828
Species: Janthinobacterium sp. Marseille (50%)
2 1286 bp 63.84 526.75 87.95
scnpilot_p_inoc_scaffold_71293
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1736 bp 61.75 652.71 92.63
scnpilot_p_inoc_scaffold_66997
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1087 bp 61.55 650.09 75.62
scnpilot_p_inoc_scaffold_75327
Genus: Sulfuricella (66.67%)
3 1408 bp 71.38 567.51 92.90
scnpilot_p_inoc_scaffold_95357
Class: Betaproteobacteria (66.67%)
3 2029 bp 69.00 571.32 58.99
scnpilot_p_inoc_scaffold_50411
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2552 bp 66.34 788.79 79.82
scnpilot_p_inoc_scaffold_75490
Order: Hydrogenophilales (66.67%)
3 1267 bp 59.35 717.32 87.13
scnpilot_p_inoc_scaffold_73686
Order: Hydrogenophilales (100%)
3 1805 bp 66.43 570.91 95.57
scnpilot_p_inoc_scaffold_52367
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1788 bp 67.00 772.73 100.34
scnpilot_p_inoc_scaffold_75564
Order: Hydrogenophilales (100%)
3 1630 bp 62.21 666.53 91.66
scnpilot_p_inoc_scaffold_61963
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1155 bp 62.25 687.14 80.52
scnpilot_p_inoc_scaffold_65523
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1776 bp 67.34 511.40 88.85
scnpilot_p_inoc_scaffold_158771
Phylum: Proteobacteria (100%)
3 1153 bp 65.48 590.76 86.38
scnpilot_p_inoc_scaffold_50676
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 2314 bp 67.33 585.80 102.29
scnpilot_p_inoc_scaffold_96387
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
3 1404 bp 69.73 672.97 98.29
scnpilot_p_inoc_scaffold_39913
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1639 bp 68.40 808.66 96.10
scnpilot_p_inoc_scaffold_61458
Species: Thiobacillus denitrificans (66.67%)
3 1837 bp 69.57 735.14 73.82
scnpilot_p_inoc_scaffold_35710
Species: BJP_IG2102_Gammaproteobacteria_62_140 (100%)
3 2394 bp 67.96 670.86 87.59
scnpilot_p_inoc_scaffold_47334
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
3 1430 bp 62.59 734.58 95.04
scnpilot_p_inoc_scaffold_72118
Order: Hydrogenophilales (100%)
3 1996 bp 65.93 601.50 88.08
scnpilot_p_inoc_scaffold_76584
Order: Hydrogenophilales (100%)
3 1448 bp 65.68 606.22 80.18
scnpilot_p_inoc_scaffold_48618
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 3537 bp 63.10 561.58 82.36
Displaying items 251-300 of 490 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.