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scnpilot_p_inoc_scaffold_1953_12

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: 11531..12136

Top 3 Functional Annotations

Value Algorithm Source
lmrA; regulatory protein TetR Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 59.8
  • Coverage: 194.0
  • Bit_score: 228
  • Evalue 1.10e-56
Regulatory protein, TetR id=3964598 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 similarity UNIREF
DB: UNIREF100
  • Identity: 53.2
  • Coverage: 188.0
  • Bit_score: 198
  • Evalue 4.90e-48
lmrA; regulatory protein TetR similarity KEGG
DB: KEGG
  • Identity: 42.5
  • Coverage: 193.0
  • Bit_score: 152
  • Evalue 1.10e-34

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Taxonomy

R_Betaproteobacteria_66_14 → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 606
ATGCCGGCCGCCACCAAGACCTCCCGGGGTCCACGCTCCGACAACCGCCTGCCCGATCTGCTCGACGCAGCCGCGCGGTTGTTCGCGCTGCACGGCTACGCGGGCACGTCCATGCGCGACATCGCGGTGGAGGCCAAGATGCTCGCGGGCTCGGTCTACTACCACTTCCCTTCGAAGGACGAGCTGCTGCTGGCCGTGTACGCCACCGGCGTGCAGGCGCTCGAAACCGCCTCCGCCACCGCCGTGGCGCGCGAGGCCGATCCCTGGCAGCGGCTCGAGGCCCTGTGCCGCGCCCACCTGGAGACCGTGCTGCGCGACAGCGACTACGCGCAGGTGCTGATCCGCGTGCTGCCCGACGACATTCCCCGCATCGCCGATCGCCTGCGCGATCTGCGCGGCAACCACGAGCGCTACTTCCGCGAAGCCATCGCCGGCCTGCCCCTGGCGCCCGGCATCGACCGCCGCTCGATGCGACTGATGCTCATGGGTGCCCTGAACTGGGCGCCTTTCTGGTTCGACCCCCAAGGACGCGATACCCCACGCGCCCTGGCGCGGAAATTCGTGGGGCTGGTCAAGGAGAAGCAGGATGTTGAAACGTCCGCCTAG
PROTEIN sequence
Length: 202
MPAATKTSRGPRSDNRLPDLLDAAARLFALHGYAGTSMRDIAVEAKMLAGSVYYHFPSKDELLLAVYATGVQALETASATAVAREADPWQRLEALCRAHLETVLRDSDYAQVLIRVLPDDIPRIADRLRDLRGNHERYFREAIAGLPLAPGIDRRSMRLMLMGALNWAPFWFDPQGRDTPRALARKFVGLVKEKQDVETSA*