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scnpilot_p_inoc_scaffold_3663_11

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: comp(7615..9069)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTA9_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 78.7
  • Coverage: 492.0
  • Bit_score: 755
  • Evalue 4.30e-215
  • rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogeno similarity UNIPROT
DB: UniProtKB
  • Identity: 78.7
  • Coverage: 492.0
  • Bit_score: 755
  • Evalue 6.00e-215
rpoN; RNA polymerase sigma-54 factor RpoN similarity KEGG
DB: KEGG
  • Identity: 66.7
  • Coverage: 469.0
  • Bit_score: 613
  • Evalue 5.70e-173

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1455
ATGGGACTTGCGCTGCGCAACGAGATCCGGCCATTGCAGGCCCCCACGCCCACACAGGCGCTGTCGCCGCGCCTGCAGCGCGCCGTGCAGCTGCTGCAGATGTCCTCGCTGGACTTCGCGGCGCTGGTGCGCCAGAAGCTGGGCGACAACCCCTTCCTGGAAAGCGAGGACGACAGCGACCCGGCCACTGCGCCGGCCGAGACCCCGGACGGCGAAGACGGCTCCGCCCCCCGGACGGAGGCCTCCAACGACGCCTGGGACAGCGGGCCGATCGGCGGCACCGACGACCGCGAGCTGTGGATCAACGACGGCGGCTCGCCACTGCGTCCCACCGGCGACGGCGACGCCACGGCCATGGACCTCACGGCCAGTGCCACCACGCTGGCCATGCACCTGCACGGCCAGCTCAACGTGATGGCCCTGACGCCGCGCGACCTGGCCCTGGCGCGCGCGGTGGTCGAGTCACTGGACGACGACGGCTACCTGCGCACGCCGCTGGAGGAGATCGCCGGCCTGGTGCCCTGCACACCGCCCGCGGCCCCGGCCGAGATGCTGGTCGCGCTGCGGCTGGTGCAGTCGCTGGAGCCCGTCGGCGTGGCCGCGCGCGGCGTGGGCGAATGCCTGCTGCTGCAGGTGCGGCAGATGGAGGACGGCCCCTGCCGCGCGCTGGCCGAGCGCATTGTGGGTGAGCACCTGCAGGCGCTGGCCGCGCGCGACGTGCCCGGCCTGGCCGCCACGCTGCGCGAGCCCTTGCGCCGCGTGGAAGCCGTGGTCGACCGCATCCGCCACCTGGACCCGCGGCCCGGCTGGCGCGTCGGCGATTCGCGCGTCGACTACATCGTGCCGGACGTGATCGTGCGCCGACAGCGCGGCCAGTGGTCGGTGCAGCTCAACCCCGCCGTGGTGCCGCGCGTGCGCCTGAACCAGGTCTATGCCGAGCTGTACCAGCGCCACCGGACCCGCAGCAGCGGCGCGCTCGGTGAGCAGCTGCAGGACGCGCGCTGGACCCTGCGCAACGTGGAGCAGCGCTTCTCCACCATCCTCGACGTGGCGCGGGCCATCGTGCGGCGCCAGCGCCACTTCCTGGAGTTCGGCCCCATGGCCATGAAGCCGCTGGTGCTGCGCGAGATCGCCGAGGAAGTCGGCGTGCACGAGTCCACCGTCTCGCGCGTGACGAACAACAAGCACATGGCCACGCCGCTGGGCGTGTTCGAGCTGAAGTACTTCTTCTCGCGGCCCATGGTCAGCGCGGCCGGCAACGCCTGCTCGGGCACCGCCATCCGCGGGCTGATCGGCGACATCATCCAGGCCGAGAACCCGGCGCGCCCGCTGTCGGACGCCGACATCACGCGCCAGCTCACCGCCCAGGGCCTGGTGGTGGCGCGGCGCACCGTCACCAAGTACCGGCAGCTGCTGCGCATCGAGCCGGTGGACAAGCGCCGCCGGCACGGCTGA
PROTEIN sequence
Length: 485
MGLALRNEIRPLQAPTPTQALSPRLQRAVQLLQMSSLDFAALVRQKLGDNPFLESEDDSDPATAPAETPDGEDGSAPRTEASNDAWDSGPIGGTDDRELWINDGGSPLRPTGDGDATAMDLTASATTLAMHLHGQLNVMALTPRDLALARAVVESLDDDGYLRTPLEEIAGLVPCTPPAAPAEMLVALRLVQSLEPVGVAARGVGECLLLQVRQMEDGPCRALAERIVGEHLQALAARDVPGLAATLREPLRRVEAVVDRIRHLDPRPGWRVGDSRVDYIVPDVIVRRQRGQWSVQLNPAVVPRVRLNQVYAELYQRHRTRSSGALGEQLQDARWTLRNVEQRFSTILDVARAIVRRQRHFLEFGPMAMKPLVLREIAEEVGVHESTVSRVTNNKHMATPLGVFELKYFFSRPMVSAAGNACSGTAIRGLIGDIIQAENPARPLSDADITRQLTAQGLVVARRTVTKYRQLLRIEPVDKRRRHG*