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scnpilot_p_inoc_scaffold_3293_3

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: 1730..2404

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM46_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 61.0
  • Coverage: 195.0
  • Bit_score: 225
  • Evalue 5.50e-56
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenopha similarity UNIPROT
DB: UniProtKB
  • Identity: 61.0
  • Coverage: 195.0
  • Bit_score: 225
  • Evalue 7.60e-56
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 53.8
  • Coverage: 212.0
  • Bit_score: 204
  • Evalue 3.70e-50

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 675
ATGGGCCAAGCTCGACGCGACGAATCCTCCACCCCCTGGGTCACCCCCCCGGGCGGGACCCCGCCGAGCCCGCCCAGGACGCCGCACTTGACCATCGTTCCGCTCCACGCCGACCGCGCCGCGCCCGACCCGTCCGAGGACTGGCCGGCCCAGTTGCGCCGCATCGCCGAACACCGGGACCCGCAGGCCTTCGCCCGCCTGTTCCAGCACTTCGCCCCGCGCGTGAAAAGCTACCTGATGCGCACCGGCAGCAGCGACGAGGCCGCCGAGGACCTGGCCCAGGAGGCCCTGGCCATGGTCTGGCGCAAGGCCGCGCTGTTCGACCCGGCGCAGGCCGCGGTGTCGACCTGGGTGTTCACCATTGCGCGCCACCTGCGCGTGGACGCCTCGCGCCGGCAACGGCTGGACTTCGCGGGCGACGAATGCTTCGAGTTCGACCAGCTCCCGGCCGACGGCCCCGGGCTGGCCGAGCAGACCGATGCGCAGCGGCTGGCGCAGCGCGTGCGCGAGGCGCTGGAGCGGCTGCCCGCCGAGCAGGCGCAGGTGCTGCGCCTGTCCTATTACGAAGACGAGCCGCACGCGCGCATCGCGACCGAACTCGGCCTGCCGCTGGGCACGGTCAAGTCGCGCATCCGGCTGGCCGTGGCCCAGTTGCGCAAGTTGCTCGACGCCTGA
PROTEIN sequence
Length: 225
MGQARRDESSTPWVTPPGGTPPSPPRTPHLTIVPLHADRAAPDPSEDWPAQLRRIAEHRDPQAFARLFQHFAPRVKSYLMRTGSSDEAAEDLAQEALAMVWRKAALFDPAQAAVSTWVFTIARHLRVDASRRQRLDFAGDECFEFDQLPADGPGLAEQTDAQRLAQRVREALERLPAEQAQVLRLSYYEDEPHARIATELGLPLGTVKSRIRLAVAQLRKLLDA*