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scnpilot_p_inoc_scaffold_5208_2

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: comp(868..1440)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPK9_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 90.6
  • Coverage: 181.0
  • Bit_score: 332
  • Evalue 3.50e-88
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenopha similarity UNIPROT
DB: UniProtKB
  • Identity: 90.6
  • Coverage: 181.0
  • Bit_score: 332
  • Evalue 4.90e-88
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 74.3
  • Coverage: 191.0
  • Bit_score: 282
  • Evalue 6.90e-74

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGAGCGCCGACCCCGACGAACTCCTCATGGACCTGATCGATCGCATCGCCCAGCGCGACGAGGCCGCGCTGAAGGCGCTCTACGACCTCACCGCGCGCAAGCTCTACGGGCTGTCGCTGCGCGTGCTGGGCTCCGCGGAGGCGGCGGAGGACGCGCTGCAGGAGGCCTACCTGCAGGTCTGGCGCAGCGCGGGCGACTACCGCGCCACACTGAGCCCGCCCATGGCCTGGCTGGGCCTGATCGTGCGCAGCCGCTCACTGGACCTGCTGCGCCGCCGCGCGGCCGATCGCGCCCACCTCACGCAGGAGCTCGACGAGGTCCTGGCCGACACGCTGCCCGGCGACGCGCCCAACCCCATGGACACCAGCCTGGCGAGCCAGCAGGCCTGGGCCATGCACCAGTGCCTGGGGCAACTGGAGAACAAGCAGCGCGAAGTGATCAGCCTGGCCTACCTGCGCGACCTGAGCCACGGCGAGCTGGCCGAGCGCCTGGCGCTGCCGCTGGGCACCGTCAAGACCTGGATCCGCCGCGGCCTGGACAAGCTGCGCGACTGCATGGCCCGTTTCGCCTGA
PROTEIN sequence
Length: 191
MSADPDELLMDLIDRIAQRDEAALKALYDLTARKLYGLSLRVLGSAEAAEDALQEAYLQVWRSAGDYRATLSPPMAWLGLIVRSRSLDLLRRRAADRAHLTQELDEVLADTLPGDAPNPMDTSLASQQAWAMHQCLGQLENKQREVISLAYLRDLSHGELAERLALPLGTVKTWIRRGLDKLRDCMARFA*