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scnpilot_p_inoc_scaffold_6636_6

Organism: SCNpilot_P_inoc_Acidovorax_68_4_fragment

partial RP 24 / 55 BSCG 24 / 51 MC: 1 ASCG 5 / 38
Location: 5724..6242

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-28 subunit FliA/WhiG id=12553402 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 167.0
  • Bit_score: 295
  • Evalue 4.30e-77
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.0
  • Coverage: 171.0
  • Bit_score: 274
  • Evalue 8.50e-71
RNA polymerase sigma-28 subunit FliA/WhiG similarity KEGG
DB: KEGG
  • Identity: 83.1
  • Coverage: 166.0
  • Bit_score: 265
  • Evalue 1.00e-68

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 519
ATGCAACGAGCCACTGACGTGACCTACACCGCAAAAGGACAGCTCGACCGCGATGCCTTGATTCGCCAGCACGTGCCCCTGGTACGGCGGCTGGCGCATCACATGATCGCCAAGCTGCCGGCCAATGTGGAGATCGACGACCTCATTCAGGTCGGCATGATCGGCCTGTCCGAGGCGCTGACGCGCTTCGAGGCCACGCAGGGTGTTCAATTCGAGACGTTCGCCACGCAGCGCATCCGTGGGGCCATGCTGGACGAATTGCGCGAAACCGATTGGATGTCGCGCAGCTCCCGCAAGAGCCAGAAGGACATCGAGAAGGCGGTCCAGCGGCTGGAGCAGAAGCTGGGGCGCAGCCCGCTGGAATCCGAAATCGCGGTCGAGCTCGACATGACGCTGGCCGATTACCAGACACTCCTGGGCAAGGTGCGCGGTACCCAGCTGGTGTACCTGGAAGACATGACGCGCGGCGACGGCGAAGACGGCGAGAGCTTTCTCGAACACCATGAGACCGCCGACGCC
PROTEIN sequence
Length: 173
MQRATDVTYTAKGQLDRDALIRQHVPLVRRLAHHMIAKLPANVEIDDLIQVGMIGLSEALTRFEATQGVQFETFATQRIRGAMLDELRETDWMSRSSRKSQKDIEKAVQRLEQKLGRSPLESEIAVELDMTLADYQTLLGKVRGTQLVYLEDMTRGDGEDGESFLEHHETADA