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scnpilot_p_inoc_scaffold_10805_3

Organism: SCNpilot_P_inoc_Acidovorax_68_4_fragment

partial RP 24 / 55 BSCG 24 / 51 MC: 1 ASCG 5 / 38
Location: 1617..2333

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9E1_ACIDE similarity UNIREF
DB: UNIREF100
  • Identity: 74.4
  • Coverage: 238.0
  • Bit_score: 342
  • Evalue 4.20e-91
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delaf similarity UNIPROT
DB: UniProtKB
  • Identity: 74.4
  • Coverage: 238.0
  • Bit_score: 342
  • Evalue 6.00e-91
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 63.2
  • Coverage: 234.0
  • Bit_score: 280
  • Evalue 3.30e-73

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Taxonomy

Acidovorax delafieldii → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 717
ATGCAGACCTTGCCACCCGCCGCCGCCTTGCCCACCACGGCTCCGCCCGGGTCCGACGCGCAGCTGGTGGCGGGCGCCTTGCGCGGCGAACCTGCAGCGTTCGAGGCCATCATGCGGCGCCACAACCGGGCGCTGTTCCGGACCGCGCGCGGCGTGGTCGCCGACGACGCCGAGGCGCAGGACGTGGTGCAGGAAACCTATTTGCGCGCCTTCACCCGGCTCGCCGACTTCCAGGGCGGCGCATCGCTCGCCACCTGGATGGCGCGCATCGCCATCAACGTGGCGCTGGACATGCTGCGCAAGCGCGGCCGTTCGGTGCCGATCGCCGTCCAGGATCTGCAGGAAGAACCTTCGCCGGAGCAGAGCATGTCCTTCAGCGCACCCCCCGGCAATTCGCCCGAATCGGTGCTGGCCAGCAGCGAGTTGCGCGCCCTGCTGCAATCGGCCATCGAAGGCCTGCCGCCCTTGTACCGCAGCGTTTTCATGCTGCGCGCCGTGCAGGAGATGAGCGTTGAGGAGACCGCTTACTGCCTGCAGGTGAGCGGCGCGGTGGTCAAGACGCGCTACCTGCGCGCCCGGGCCCTGCTGCGCGACGCGCTCAGCGCGCAGATCGAGGCGCACACCGACGGCGTCTTCGCCTTTGCCGGCGAGCGCTGCGACCAGGTCGTGCGCCATGTGCTGGCGCAGCTGCACACGCGCGGCCTGATTTCCCCTTAG
PROTEIN sequence
Length: 239
MQTLPPAAALPTTAPPGSDAQLVAGALRGEPAAFEAIMRRHNRALFRTARGVVADDAEAQDVVQETYLRAFTRLADFQGGASLATWMARIAINVALDMLRKRGRSVPIAVQDLQEEPSPEQSMSFSAPPGNSPESVLASSELRALLQSAIEGLPPLYRSVFMLRAVQEMSVEETAYCLQVSGAVVKTRYLRARALLRDALSAQIEAHTDGVFAFAGERCDQVVRHVLAQLHTRGLISP*