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scnpilot_p_inoc_scaffold_102_113

Organism: SCNpilot_P_inoc_Burkholderiales_62_9

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(123018..123329)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L21 n=3 Tax=Bordetella RepID=RL21_BORA1 similarity UNIREF
DB: UNIREF100
  • Identity: 86.4
  • Coverage: 103.0
  • Bit_score: 185
  • Evalue 2.90e-44
rplU; ribosomal protein L21 similarity KEGG
DB: KEGG
  • Identity: 86.4
  • Coverage: 103.0
  • Bit_score: 185
  • Evalue 8.10e-45
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordet similarity UNIPROT
DB: UniProtKB
  • Identity: 86.4
  • Coverage: 103.0
  • Bit_score: 185
  • Evalue 4.00e-44

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Taxonomy

Bordetella holmesii → Bordetella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 312
ATGTACGCGGTCATAAAAACCGGCGGAAAGCAGTATCGCGTTGCCGCTGGCGAAAAGCTGAAAATAGAACAGATACCGGCAGACATTGGGCAAGAGATCACGCTGGACCAGGTCCTGGCAGTGGGCGAAGGCGATCAACTCAAGATCGGCGCGCCTCTTCTGTCCGGTGCCGTGGTCACGGCCAAGGTTCTTGCACACGGTCGCCACGACAAGGTCCGCATCTTCAAGATGCGTCGGCGCAAGCACTACCAGAAGCGCCAAGGCCACCGTCAAAACTACACCGAAATCCAGATCGGCACCATTTCCGCCTGA
PROTEIN sequence
Length: 104
MYAVIKTGGKQYRVAAGEKLKIEQIPADIGQEITLDQVLAVGEGDQLKIGAPLLSGAVVTAKVLAHGRHDKVRIFKMRRRKHYQKRQGHRQNYTEIQIGTISA*